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hints-for-statistics-and-machine-learning-models

This file will give you an overall idea to choose appropriate statistical test

iarc-nf

List of IARC bioinformatics nextflow pipelines

ibm3202

Google Colab Tutorials for IBM3202

imagecoloranalysis

ImageColorAnalysis is a repository with a Python script for color analysis in images using ImageMagick. It generates bash scripts for individual JPG images to analyze specific colors. It provides a flexible solution for extracting color information from images, applicable in various domains such as image classification and data analysis.

long-reads-sequencing-of-snca-in-diseases

Scripts accompanying Tseng E, Rowell WJ, Glenn O-C, Hon T, Barrera J, Kujawa S and Chiba-Falek O (2019) The Landscape of SNCA Transcripts Across Synucleinopathies: New Insights From Long Reads Sequencing Analysis. Front. Genet. 10:584. doi: 10.3389/fgene.2019.00584

midbrainorganoid_scrnaseq

R scripts for filtering, integrating, clustering, annotating and looking at gene expression within clusters from two samples of three midbrain organoids

mirnaseq-de-analysis-qc

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

ml-youtube-courses

Latest ML / AI courses on YouTube.

mosea

Motif Scan and Enrichment Analysis (MoSEA)

mywebapp

MyWebApp: A simple and lightweight web application.

nextflow-scif

This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

nf_ngschool20

Nextflow training material for NGSchool summer 2020

ngs-rnaseq-training

Hands-On training 2015

ngs-variant-analysis-training-2016

Adapted session for a one-day training

nquire

A statistical framework for ploidy estimation using NGS short-read data

omicspls_shortcourse

Statistical course on multi-omics data integration

oneliner_100day_challenge

Bioinformatics one-liner for 100 days

panoramic

A package for constructing eukaryotic pan-genomes

pdf-file-finder

a simple Python script that helps you find and list all PDF files in the current directory. It provides an easy way to quickly locate and work with PDF files within a given folder.

perseus-ms-proteomics-venn

Mass spectrometry Perseus Data analysis

prace-spark-for-data-scientists

Course materials for PRACE Introduction to Spark for Data Scientists.

proteinmpnn

Code for the ProteinMPNN paper

pyspark_linux

r-markdown-dataset-analysis

R Markdown documentation template for two NGS datasets

rbp-data-processing

RBP-Data-Processing is a repository containing R code for processing RNA-binding protein (RBP) datasets. The code imports the data table, performs data cleaning and transformation operations, and saves the processed dataset. It provides a convenient and reproducible workflow for analyzing RBP data obtained from external sources.

rna-seq-pipeline

rna-seq-scaledlengthtpm

To perform RNA-Seq data analysis and calculate length-scaled transcripts per million (TPM) values using the Salmon tool and the GenomicFeatures package in R.

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-analysis-junctionseq-qorts

This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.