Comments (2)
Hi, thanks for your feedback. Please check if any ALT allele is '.'
in the input VCF. For now, cellSNP only checks if the REF or ALT allele in the input VCF is of length 1 (single character), but did not check if this character is one of "A, C, G, T, N".
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Thank you for the quick response! You were correct, some entries in the reference VCF have blank alternate alleles. I'll remove those lines and that should probably resolve the problem.
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Related Issues (20)
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