Comments (1)
Just refer it to your other issue in cellsnp-lite: single-cell-genetics/cellsnp-lite#3 (comment)
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Related Issues (20)
- Question about running cellSNP on merged BAM files from multiple samples HOT 4
- Change the flag filtering default to include PCR duplicates HOT 4
- Running cellSNP on transcriptomic BAM from salmon alevin HOT 4
- Reference Genome HOT 1
- Wrong number of chromosomes in output file? HOT 3
- Some SNPs are not in gene HOT 1
- AD in cells HOT 1
- Empty AD&DP mtx HOT 23
- KeyError: '.' in cellSNP/pileup_utils.py causing failure of temp file merging HOT 2
- Chromosome naming in reference VCF files HOT 11
- Run time estimation HOT 1
- generating VCF for REGION_VCF from RNA-seq data HOT 1
- Adapting cellSNP for gene-of-interest / indels / multiple scRNA-seq samples
- RuntimeWarning: divide by zero encountered in log HOT 9
- Default nan-handling policy is a memory hog HOT 1
- Is it expected to generate a "position x barcode" matrix? HOT 1
- output sparse matrix HOT 11
- No SNPs called in more than 1 barcodes HOT 3
- Run time estimation HOT 3
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