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License: BSD 2-Clause "Simplified" License
Different correlation metrics for single cell data shall be applied and evaluated. The current open points are:
Implement and benchmark different pseudo time orderings:
New open issues:
Calculate correlation on Blueprint data (Spearman & Rho)
Repeat pseudo time & RNA velocity analysis with other pathogenes (and cell types)
Test WOT (waddington optimal transport)
Test bbknn correction of data
Test correlation for different time points
Define a project outline
Start with correlation QTLs (think about targeted approach)
Next meeting next Monday (05-10).
Perform RNA velocity on the data set:
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