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Name: Ben Shababo
Type: User
Name: Ben Shababo
Type: User
Data Mining Final (STAT 4240)
MATLAB based software for viewing and analyzing Calcium indicator data.
Trying to solve the common input problem for functional connectivity inference.
a repository containing everything relevant to our fast non-negative deconvolution work
Code for computing the integrated information (big phi) of a system and other relevant quantities and structures.
This is a small-scale demo of using Bayesian event inference methods to detect postsynaptic currents.
Making Masa's stimulation code.
Modular Object-Oriented Games (MOOG): Python-based game engine for reinforcement learning, psychology, and neurophysiology.
Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
Deconvolution of calcium imaging data
A MATLAB sketch of a simple framework for controlling experiments. The essential object is a sequence of actions in time. Any programmatic way of creating a sequence of actions - including adaptive, closed-loop, or totally predetermined sequences. Action objects, in general, will be split into two classes: io and processing. We want to create a simple core of objects can be extended by users and therefore interface with most hardware or software. Data related objects include general types that are exchanged with hardware, i.e. input and output signals, and hardware interfaces like DAQ and channel objects. From a user's perspective, we want to make it (relatively) easy to orchestrate experiments that require controlling a lot of hardware and/or online analysis. Ideally, we can abstract a protocol as a sequence of nodes, and the user will interface with a node-based gui, i.e. a flow-diagram. As a user, I am expected - at least for now - to understand how to write my own modules. As a library of modules is developed, the software may become easier to use. But for the developer's sake and for hopeful flexibility, we only want to write some abstract classes. The rule of thumb will be to resist writing anything too specific.
A Record Engine plugin that saves data in the original Open Ephys data format
Software for processing, recording, and visualizing multichannel electrophysiology data
A Bayesian/probabilistic approach to modelling postsynaptic currents in whole-cell voltage-clamp traces. PSCs can then be detected from noisy data using Gibbs Sampling.
Distribution of code implementing the Bayesian PSC detection algorithm described in Merel et al, J. Neuro. Meths., 2016.
The HTML Presentation Framework
Source plugin for Open Ephys Acquisition Board with custom FPGA (available Dec 2022)
code to implement our sequential monte carlo (smc) algorithm to perform optimal optical spike inference (oopsi) for individual neurons
sync conda environment pre-commit hook
Large-scale neural data analysis with Spark
TTL toggle and display panels to help with debugging
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.