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campinas_template

Calgary / Campinas T1 template

chest_xray_view_detect

Detecting current view in chest x-rays

cnn-ms-lesion-segmentation

MS lesion segmentation using cascaded 3D convolutional neural networks

covid-net

COVID-Net Open Source Initiative

covid19

Resources for COVID-19 detection in x-rays

dalle-pytorch

Implementation / replication of DALL-E, OpenAI's Text to Image Transformer, in Pytorch

docker_repositories

Set of several barebone docker repositories for medical imaging

dotfiles

Dotfile configurations

dynamicmemory

ectrims2018_poster

ECTRIMS 2018 poster

fastsurfer

PyTorch implementation of FastSurferCNN

fewshot_gan-unet3d

Tensorflow implementation of our paper: Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning

forum

ibooks-highlights

Export your iBooks highlights to markdown files.

jaguar

JAGUAR: Just fAst seGmentation bUt fAsteR

jekyll

Jekyll is a blog-aware, static site generator in Ruby

lab_notebook

lesion-toads

Automated brain tissue segmentation method proposed by Shiee et al. 2010 interfaced by the niPype library

maia_seminar

MAIA seminar: performing medical imaging segmentation like a pro

marga

Skull-stripping toolbox for T1w and T2w MRI

markdown-cv

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

mdgru

Code for Multi-dimensional Gated Recurrent Units for the Segmentation of Biomedical Data

medicalzoopytorch

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

miccai-opensourcepapers

MICCAI 2020 Open Source Papers

modelsgenesis

Official Keras & PyTorch Implementation and Pre-trained Models for Models Genesis - MICCAI 2019

mri_brain_segmentation_evaluation

MSSEG challenge evaluation binaries and source

mri_intensity_normalization

Intensity normalization of multi-channel MRI images using the method proposed by Nyul et al. 2000

mri_utils

Image processing utils for brain MRI

msseg

Automated brain tissue segmentation of Magnetic Resonance Images containing White Matter lesions.

niclib-1