senresearch / liteqtl.jl Goto Github PK

> @time pval_matrix_no_cov = scan(
    Y,
    G,
    export_matrix = export_matrix,
    maf_threshold = 0.00,
    usegpu = false,
    lod_or_pval = "pval"
);

ERROR: UndefVarError: `pval_calc` not defined

(@v1.6) pkg> add LiteQTL
    Updating registry at `~/.julia/registries/General`
   Resolving package versions...
ERROR: Unsatisfiable requirements detected for package MatrixLMnet [436227dc]:
 MatrixLMnet [436227dc] log:
 ├─possible versions are: 0.1.0 or uninstalled
 ├─restricted to versions * by an explicit requirement, leaving only versions 0.1.0
 └─restricted by compatibility requirements with DataFrames [a93c6f00] to versions: uninstalled — no versions left
   └─DataFrames [a93c6f00] log:
     ├─possible versions are: 0.11.7-1.2.2 or uninstalled
     ├─restricted to versions * by an explicit requirement, leaving only versions 0.11.7-1.2.2
     └─restricted by compatibility requirements with LiteQTL [85e3bc59] to versions: 0.21.0-0.21.8
       └─LiteQTL [85e3bc59] log:
         ├─possible versions are: 0.1.2-0.2.1 or uninstalled
         └─restricted to versions * by an explicit requirement, leaving only versions 0.1.2-0.2.1