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SaSii is a R script for estimating genetic parameters from genotypic data for inferring sample size effects on genetic analysis. Applications of this package include planning the number of samples necessary to obtain robust population genetic estimates and evaluating if obtained sample size is large enough.

Home Page: https://sasii.readthedocs.io/en/latest/

License: GNU General Public License v3.0

R 100.00%
population-genetics rarefaction

sasii's Introduction

Hi there ๐Ÿ‘‹



java python c c c

sasii's People

Contributors

scaketti avatar

Watchers

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sasii's Issues

Add plot parameters in config file

To do

One of the discussed points in one of our meetings was about the possibility to change the plotting style of the results (Ex: add parameter to just plot graphs from previous results).

Some points that might be interesting adding:

  • Just plot graphs and do not calculate any data;
  • List which graphs the user wants to plot on this run;
  • Change plot axis ranges to improve visualization (in some cases when population has many individuals, the original plot compress the data, worsening visualization);
  • Change plots colors and axis names.

Write better README

To add

  • Info about general idea of SaSii.
  • Insert a table with most common csv separators ASCII values
  • Insert config file example
  • Insert csv file type 1 and 2 examples

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