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View Code? Open in Web Editor NEWBCO App by Seven Bridges
Home Page: https://sbg.github.io/bco-app/
License: GNU Affero General Public License v3.0
BCO App by Seven Bridges
Home Page: https://sbg.github.io/bco-app/
License: GNU Affero General Public License v3.0
The Biocompute Object project includes a database of BCOs. Integrating submission functionality to the BCO App will provide interoperability with this resource.
So far I have seen this with two CWL 1.0 workflows:
STAR RNAseq Alignment
SilicoFCM BWA-GATK Unified Workflow (private)
This may occur for others as well. We should check which CWL fields are being parsed to this domain in the BCO, and whether it is CWL 1.0 compliant.
Regardless of which SB platform is the home of the CWL app that is used as the basis for the BCO, the URI in the execution domain defaults to the commercial platform. CGC, CAVATICA, BioData Catalyst, etc. should be parsed from the CWL.
Allow the BCO App to read existing BCOs in .json and/or .yaml format.
If workflows in CWL are included in the execution domain, then the BCO App should provide instructions on execution and reproducing the workflow run.
Hi,
I am using BCO-App to import the CWL by CWL composer.
I got CWL example from here
https://github.com/ncbi/cwl-ngs-workflows-cbb/blob/master/workflows/RNA-Seq/rnaseq-alignment-quantification.cwl
Every time I import the CWL file, the webpage just get disconnected. When I click reconnect, it just likes starting a new BCO-App session without any pre-existing info inside.
I am looking forward to the solutions.
When creating a BCO from a task on the Seven Bridges platform, the BCO App should include links to all required information needed to reproduce an analysis. This includes links to the various files and raw CWL.
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