Comments (1)
Hi,
In the data that the PBMC Azimuth reference is created from, neutrophils are absent due to the experimental protocols used in generating the data. There are no immediate plans to augment the reference with neutrophils but you can check out this thread for a discussion of analysis options if your query data contains neutrophils.
from azimuth.
Related Issues (20)
- Error in .local(x, na.rm, dims, ...) : object 'CRsparse_colSums' not found error from RunAzimuth() HOT 8
- Compatibility between azimuth with seurat v4 HOT 3
- Error in eval(predvars, data, env) : object 'log_umi' not found HOT 3
- Error 'could not find function "Key<-"' when using docker
- changing `k.weight` in RunAzimuth seems does not allow workaround error in FindWeights
- Markers listed in Azimuth for human tonsil are incorrect and in conflict with original preprint?
- Error in indices.ba HOT 1
- Error at 'error in evaluating the argument 'x' in selecting a method for function 't': non-conformable arrays' HOT 4
- Azimuth UMAP result is not consistent with Seurat HOT 2
- Azimuth and Signac error HOT 2
- RunAzimuth not working with SCT assay HOT 1
- ConvertEnsembleToSymbol HOT 2
- Is there a way to find out which reference genes drive the cell type prediction score? HOT 1
- Error when using the web app for PBMC annotation HOT 1
- AzimuthReference error: refAssay (SCT) should contain a single SCT model
- AzimuthReference fails when metadata field contains empty factor levels
- Docker image tag says "v0.5.0" but sessionInfo() inside the container returns "Azimuth_0.4.6" HOT 1
- Azimuth and integrated data HOT 1
- RunAzimuth ATAC working for BMMC but not for PBMC atlas
- Error Installing Azimuth
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from azimuth.