sarthakpati Goto Github PK

followers: 39.0 following: 31.0 repos: 138.0 gists: 9.0

Name: Sarthak Pati

Type: User

Company: @IUCompPath, @mlcommons

Bio: Researcher and Software Architect at the Division of Computational Pathology, Indiana University School of Medicine.

Twitter: sarthakpati

Location: Philadelphia, PA

Blog: sarthakpati.github.io

Current Role

Software Architect & AI Researcher at Indiana University's Division of Computational Pathology, and Technical Lead at the Medical Working Group of MLCommons working on designing solutions for privacy-focussed AI in Healthcare.

I believe open software fosters better science, and thus have been involved in multiple open-source projects and their associated research studies, including the Federated Tumor Segmentation (FeTS) platform and the Cancer Imaging Phenomics Toolkit (CaPTk). I am currently focusing my efforts on the following:

Interests

Applying concepts of AI (with a focus on privacy) to solve problems in healthcare.
Committed to doing reproducible and deployable research.
- Firm believer of the saying a weak algorithm that is well written & integrated is better than a strong algorithm that isn't.
Advocating for F.A.I.R. in research.
Helping people choose the correct career path.

How to reach me

patis [at] iu.edu

Sarthak Pati's Projects

openfl

An open framework for Federated Learning.

openglcheckwithqt

Checking OpenGL version using Qt

openmeeg

A C++ package for low-frequency bio-electromagnetism solving forward problems in the field of EEG and MEG.

openslide-feedstock

A conda-smithy repository for openslide.

opm

OpenSlide Patch Manager

plotneuralnet

Latex code for making neural networks diagrams

ppmd

PPMd(Ver.H/Ver.I) encoding python library (cffi)

pregis

Image registration in the presence of pathology

pstrip

PCA Model for Brain Extraction

ptgnn

A PyTorch Graph Neural Network Library

py7zr

7zip in python3 with ZStandard, PPMd, LZMA2, LZMA1, Delta, BCJ, BZip2, and Deflate compressions, and AES encryption.

pybcj

BCJ(Branch-Call-Jump) filter for python

pybcpy

python differential backup copy tool

pybcpy-feedstock

A conda-smithy repository for pybcpy.

pycon2019-click-tutorial

PyCon 2019 Tutorial: Writing Command Line Applications that Click

pycox

Survival analysis with PyTorch

pydaily

Python daily utilities

pymedio

read arbitrary medical image formats with python

pyppmd

``pyppmd`` module provides classes and functions for compressing and decompressing text data, using PPM(Prediction by partial matching) compression algorithm which has several variations of implementations.