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Name: Santosh
Type: User
Bio: Bioinformatician | NGS | Data Scientist
Name: Santosh
Type: User
Bio: Bioinformatician | NGS | Data Scientist
Shiny app for running AMR++ analytic pipeline from the Microbial Ecology Group
Antimicrobial Resistance Identification By Assembly
Get assembly statistics from FASTA and FASTQ files
A curated list of awesome Bioinformatics libraries and software.
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
Short lessons from FAS Informatics coffee hour
A curated list of useful bioinformatics and computational biology tools, sorted by category.
List of conferences with talk videos posted online
Cheat Sheets
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
This Snakemake pipeline implements the GATK best-practices workflow
:dolphin: A comprehensive tutorial on getting started with Docker!
Scripts and databases for amplicon and metagenome
The Leek group guide to genomics papers
Learning the Variant Call Format
Benchmarking of long-read assembly tools for bacterial whole genomes
Study guides for MIT's 15.003 Data Science Tools
Python Data Science Handbook: full text in Jupyter Notebooks
Template Nextflow pipeline to run quality control (QC) on FastQ files using FastQC & generate an output HTML report using MultiQC
materials for the RNA-Seq workshop on Trinity and Tuxedo, covering de novo and genome-guided transcript assembly and downstream analysis.
HPC based pipelines for variant calling using GATK
Variant Calling Pipeline Using GATK4 and Nextflow
ARTIC SARS-CoV-2 workflow and reporting
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.