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alphamissense

alphamissensecheck

See how pathogenic your mutations are according to AlphaMissense based on your 23andme raw data

amazon-braket-algorithm-library

amazon-braket-examples

Example notebooks that show how to apply quantum computing in Amazon Braket.

amazon-genomics-cli

amazon-neptune-samples

Samples and documentation for using the Amazon Neptune graph database service

amazon-omics-end-to-end-genomics

amazon-omics-tutorials

arcashla

Fast and accurate in silico inference of HLA genotypes from RNA-seq

arriba

Fast and accurate gene fusion detection from RNA-Seq data

awesome-ds-setting

A tutorial for setting a new machine with core data science tools

aws-deep-learning-amis

This is the documentation for AWS Deep Learning AMIs: your one-stop shop for deep learning in the cloud

bam-readcount

Count bases in BAM/CRAM files

basicfiltering

Basic filtering scripts for various mutation calling tools

biogpt

brass

Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.

cancervar

Clinical interpretation of somatic mutations in cancer

car-t

Clonal kinetics and single-cell transcriptional profiling of adoptively transferred CD19-specific CD8+ CAR-T cells

cbea-rnafusion

RNA-seq analysis pipeline for detection gene-fusions

cbea-scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

cnmf

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

commondatamodel

Definition and DDLs for the OMOP Common Data Model (CDM)

conpair

Concordance and contamination estimator for tumor–normal pairs

consensustme

ConsensusTME Gene Sets and R Script

copykat

countsimqc

countsimQC - Compare characteristic features of count data sets

coxhd

This repo won't be updated. Please see https://github.com/gerstung-lab/CoxHD for the most recent version

cumulus

Cloud-based scalable and efficient single-cell genomics workflows

curie-rna-seq

Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification)