Repository for a day-and-a-half workshop on using MG-RAST for metagenomics to be held at University of Tennessee Knoxville March 15-16 2018.
Your instructors are Robert Murdoch, Coordinator for the Center for Biotechnology at UTK and Will Trimble from Argonne National Laboratory
There is an etherpad group chat room for this class-- feel free to ask questions or take notes here. It's world readable and world writeable.
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MG-RAST website walkthrough
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Lunch
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MG-RAST Tools (using docker)
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Using the NCBI API (using docker)
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open shop
- Argonne soils automation workshop 2014 This workshop had a more expansive day-and-a-half workshop in 2014.
- ANGUS Next-Gen Sequence Analysis Workshop 2017 An amazing, cloud-based set of tutorials for beginners in NGS sequence analysis
- EDAMAME course Tutorial on 16S sequence analysis using QIIME (and R)
- Adina's NCBI lesson--building a private BLAST database
- Software Carpentry reference page
- Software Carpentry tutorial - The Unix shell
- The shell handout (pdf)- Command Reference
- explainshell.com
- Intro to Bash Programming