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Code and Datasets for paper "Towards early detection of adverse drug reactions: combining pre-clinical drug structures and post-market safety reports"

Python 100.00%
label-propagation signal-detection-algorithm

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irreversibly geekyneuro fagan2888 vaishalising

lp-sda's Issues

pickle文件

你好，请问你在代码中用到的pickle文件能上传一下吗，不太清楚你的pickle文件是什么内容。非常感谢

pkl file

Hello, may I ask where to get the adlist_freq. pkl file and umlid2adrid_mapping.pkl file used in get_sider_pairs(dump_file) function?

Original signal score file missing

Hi, I'm not able to find original signal score file in the repo.
When I created a folder named 'SignalScoresSource', I'm getting the following error:

Traceback (most recent call last):
File "run.py", line 115, in
more_main()
File "run.py", line 112, in more_main
main(args)
File "run.py", line 37, in main
data = FAERSdata(args.input, args.method, args.year)
File "/Users/user/Downloads/LP-SDA-master/FAERSdata.py", line 12, in init
Files = [Files[-1]]
IndexError: list index out of range

Please help.
Thanks in advance.

I cannot run your LP-SDA codes following issues

Dear, I recently read your article really impressively.

I want to run your code, but I cannot import split_data, sample_zeros from utils.
I cannot find util module.

How can I download module 'utils'?

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