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A fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data

License: MIT License

C++ 97.60% Makefile 0.31% C 2.02% Shell 0.07%
bioinformatics cpp genomics sequencing simulator snp-data statistics

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Empirical SNP data

Hi there,

I have genotyped ~3000 SNPs for 63 individuals, and would like to simulate future genetic variation and effective population size, under 3 different initial effective population size scenarios (250, 400 and 800). I do not know the position of the SNPs on the genome.

Is it possible to begin a simulation in GeneEvolve using empirical data, without knowledge of SNP locations?

Thank you very much.

Cheers,
Sarah

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