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CAYA Analysis

Jupyter Notebook 99.02% HTML 0.92% Python 0.04% Shell 0.02%
germline-variants germline cancer-genomics jupyter-notebook oncology childhood cancer-research

germline_caya_solidtumor_analysis's Introduction

Data Analysis for : Diverse Genes with Germline Variants Converging on p53 Network May Predispose to Solid Tumors in Children, Adolescents, and Young Adults

  • This github dir contains the data analysis jupyter notebooks, scripts and data tables accompaning the paper : Diverse Genes with Germline Variants Converging on p53 Network May Predispose to Solid Tumors in Children, Adolescents, and Young Adults
    • GermLine Analysis of Children, Adolescents, and Young Adults (C-AYA) with SolidTumor
  • Authors : Sara Akhavanfard, Roshan Padmanabhan, Lamis Yehia, Feixiong Cheng, Charis Eng

Contents

IVA Filteration Parameters

Analysis

Known Cancer Predisposing Genes (KCPG)

Candidate Genes

C-AYA Patiants with solid tumors vs NonTCGA-ExAC controls

Congential Heart Defects (CHD) Related Genes / Variants

Scripts

  • includes inhouse scipts to process and anlayze the data

Data

  • table dir contain the supplimentary excel files
  • Browse the data at SRA RunSelector
  • Summary List for project PRJNA559601 here

germline_caya_solidtumor_analysis's People

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