topic-tools: fails in compilation with sysroots/x86_64-linux/usr/lib/libboost_thread-mt.so: could not read symbols: File in wrong format about meta-ros

[bulwahn]

The full log (on my machine) is:

| DEBUG: SITE files ['endian-little', 'bit-32', 'ix86-common', 'common-linux', 'common-glibc', 'i586-linux', 'common']
| DEBUG: Executing shell function do_compile
| NOTE: make -j 8
| /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -H/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools -B/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build --check-build-system CMakeFiles/Makefile.cmake 0
| /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_progress_start /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles/progress.marks
| make -f CMakeFiles/Makefile2 all
| make[1]: Entering directory /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build' | make -f CMakeFiles/topic_tools_gencpp.dir/build.make CMakeFiles/topic_tools_gencpp.dir/depend | make -f CMakeFiles/topic_tools_genlisp.dir/build.make CMakeFiles/topic_tools_genlisp.dir/depend | make -f CMakeFiles/topic_tools_genpy.dir/build.make CMakeFiles/topic_tools_genpy.dir/depend | make[2]: Entering directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| cd /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build && /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles/topic_tools_gencpp.dir/DependInfo.cmake --color=
| make[2]: Entering directory /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build' | cd /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build && /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles/topic_tools_genlisp.dir/DependInfo.cmake --color= | make[2]: Entering directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| cd /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build && /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles/topic_tools_genpy.dir/DependInfo.cmake --color=
| make[2]: Leaving directory /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build' | make[2]: Leaving directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| make -f CMakeFiles/topic_tools_gencpp.dir/build.make CMakeFiles/topic_tools_gencpp.dir/build
| make[2]: Leaving directory /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build' | make -f CMakeFiles/topic_tools_genlisp.dir/build.make CMakeFiles/topic_tools_genlisp.dir/build | make -f CMakeFiles/topic_tools_genpy.dir/build.make CMakeFiles/topic_tools_genpy.dir/build | make[2]: Entering directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| make[2]: Nothing to be done for CMakeFiles/topic_tools_gencpp.dir/build'. | make[2]: Leaving directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| make[2]: Entering directory /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build' | make[2]: Nothing to be done forCMakeFiles/topic_tools_genlisp.dir/build'.
| make[2]: Leaving directory /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build' | /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_progress_report /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles 9 10 11 12 | make[2]: Entering directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| make[2]: Nothing to be done for CMakeFiles/topic_tools_genpy.dir/build'. | make[2]: Leaving directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_progress_report /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles 13 14 15 16
| /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_progress_report /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles 17 18 19 20 21
| [ 20%] [ 40%] [ 65%] Built target topic_tools_gencpp
| make -f CMakeFiles/topic_tools.dir/build.make CMakeFiles/topic_tools.dir/depend
| Built target topic_tools_genlisp
| Built target topic_tools_genpy
| make[2]: Entering directory /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build' | cd /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build && /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build/CMakeFiles/topic_tools.dir/DependInfo.cmake --color= | make[2]: Leaving directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| make -f CMakeFiles/topic_tools.dir/build.make CMakeFiles/topic_tools.dir/build
| make[2]: Entering directory /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build' | Linking CXX shared library devel/lib/libtopic_tools.so | /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/cmake -E cmake_link_script CMakeFiles/topic_tools.dir/link.txt --verbose=1 | /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/bin/i586-oe-linux/i586-oe-linux-g++ -fPIC -m32 -march=i586 --sysroot=/home/lukas/oe-core/build/tmp-eglibc/sysroots/qemux86 -O2 -pipe -g -feliminate-unused-debug-types -fpermissive -fvisibility-inlines-hidden -fpermissive -Wl,-O1 -Wl,--hash-style=gnu -Wl,--as-needed -shared -Wl,-soname,libtopic_tools.so -o devel/lib/libtopic_tools.so CMakeFiles/topic_tools.dir/src/shape_shifter.cpp.o CMakeFiles/topic_tools.dir/src/parse.cpp.o -lcpp_common -lrosconsole -lboost_regex-mt -lboost_thread-mt -llog4cxx -lrostime -lboost_date_time-mt -lboost_system-mt -lroscpp -lboost_signals-mt -lboost_filesystem-mt -lroscpp_serialization -lxmlrpcpp /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/lib/libboost_thread-mt.so -Wl,-rpath,/home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/lib: | /home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/lib/libboost_thread-mt.so: could not read symbols: File in wrong format | collect2: error: ld returned 1 exit status | make[2]: *** [devel/lib/libtopic_tools.so] Error 1 | make[2]: Leaving directory/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| make[1]: *** [CMakeFiles/topic_tools.dir/all] Error 2
| make[1]: Leaving directory `/home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/ros_comm-1.9.41/tools/topic_tools/build'
| make: *** [all] Error 2
| ERROR: oe_runmake failed
| ERROR: Function failed: do_compile (see /home/lukas/oe-core/build/tmp-eglibc/work/i586-oe-linux/topic-tools/1.9.41-r0/temp/log.do_compile.26525 for further information)
ERROR: Task 7 (/home/lukas/oe-core/meta-ros/recipes-ros/ros-comm/topic-tools_1.9.41.bb, do_compile) failed with exit code '1'
NOTE: Tasks Summary: Attempted 1209 tasks of which 1207 didn't need to be rerun and 1 failed.

[bulwahn]

The log was produced with the current commit 26571f8 and the solution provided by #50.

[herbrechtsmeier]

You should try to add boost to the DEPENDS. If this doesn't help we have to remove the absolute link paths from the generated CMake files. I have done some work in this direction but haven't the time to finish it.

[bulwahn]

Just adding boost to the DEPENDS did not help. A temporary solution is to add

list(REMOVE_AT catkin_LIBRARIES -1)

to the CMakeLists.txt

[herbrechtsmeier]

@bulwahn I have rethink about the problem and we shouldn't remove the absolute link paths for now as they mask problems. The same is true for your solution. The real solution must be a missing DEPENDS of the find_package catkin components or there dependencies. One of the components is taken from the native sysroot and adds the "/home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/lib/libboost_thread-mt.so" to the link flags. This means the component is missing in the cross sysroot. You should find the missing component if you grep for the path in all *Config.cmake files in the sysroot.

[bulwahn]

It is probably caused by this line in rostestConfig.cmake of the rostest-native.

./x86_64-linux/usr/share/rostest/cmake/rostestConfig.cmake:set(libraries "/home/lukas/oe-core/build/tmp-eglibc/sysroots/x86_64-linux/usr/lib/libboost_thread-mt.so")

We are back at the rostest-native problem. Does this package really need the rostest executable at build time?

[herbrechtsmeier]

Because the package use add_rostest we need rostest-native. We have to add rostest and rostest-native to the DEPENDS of topic-tools or we have to use rostest only and add rostest-native to the DEPENDS of rostest. Rostest have an include file which must be used from the cross sysroot (rostest) and a binary which must be used from the native sysroot (rostest-native).

[bulwahn]

What's about the following idea? We split the files in different packages like this:
The package rostest-dev contains the include file. The package rostest and rostest-native contains the binary.
Then we could write in the topic-tools recipe to depend on rostest-dev and rostest-native.
This would also fit with my understanding of the general idea of -dev packages.

[herbrechtsmeier]

@bulwahn This is automatically done by OpenEmbedded. You only need to add rostest to the DEPENDS.

[bulwahn]

I tried this line in the topic-tools recipe:

DEPENDS = "rostest rostest-native roscpp"

but this did not help. Maybe you know a better solution, otherwise we should just choose d248961 and look at this problem again later.

[herbrechtsmeier]

Have you try a clean build? My build was successful.

[bulwahn]

I retried it on a clean build and the build was successful. Please commit your suggestion to the main repository.