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Name: Rory Kirchner
Type: User
Bio: neuroscientist, bioinformatician and programmer
Twitter: RoryKirchner
Location: Branford, CT
Name: Rory Kirchner
Type: User
Bio: neuroscientist, bioinformatician and programmer
Twitter: RoryKirchner
Location: Branford, CT
Analysis scripts for the Rubin lab's cell fate conversion experiment
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
Example CWL workflow for running Salmon
Tools for working with SAM/BAM data
Single-Cell Analysis in Python. Scales to >1M cells.
R package for analyzing single-cell RNA-seq data
Semantic Annotations for Linked Avro Data
R toolkit for single cell genomics
Windowed Adaptive Trimming for fastq files using quality
A python library for creating simulated regulatory DNA sequences
single-cell data analysis incubator
whitelisted singlecell barcodes and information regarding where molecular/sample/cellular barcodes are in each read, for various singlecell protocols
Inspect kallisto RNA-Seq output
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
A small-RNA sequencing analysis pipeline
Emacs advanced Kit focused on Evil: The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!
private layers for spacemacs
data for the -spliced- blog
Wrappers around NGS peak callers to both call peaks and run IDR
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tcrbiter
Testing if I can just transfer repositories to enterprise accounts
SinglePaged - Simple Jekyll template
Super small biological datasets for unit testing
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
A functional standard library for Python.
Post-processor for TopHat unmapped.bam files making them useable by downstream software.
Materials for short, half-day workshops
Understand your transcriptome assembly
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.