rondinif / incertae-sedis

Experimental testbeds to produce some witty program

title	description	author	tags	created	modified
incertae-sedis	Incertae sedis is an expression used in the scientific classification to indicate an uncertain systematic position of a taxon.	Franco Rondini	wikidata rdf spqrql botanica	2016 Oct 23	2016 Oct 23

Incertae sedis

free knowledge to break free from uncertainty

Does the mind ask Data for Food ? look at here!

In the laboratories of this project we will experience free software to access free information to try to get five minutes of satisfaction to our hunger for knowledge.

Features

the project is currently in incubation; It should simply be considered a playground where you can exercise with some areas of interest.

1. TBD To be defined ( and to be done )

   2017 Jan is the date planned for the definition of a first requirements draft. (branch: requirements-draft is currently available for changes)

2. TBD

   2017 Mar is the date planned for the more definitive requirements draft and a first alpha preview of the first draft.

3. TDB

   2017 Sep is the date planned for a first usable set of tools.

Tools

Revese Parent Taxon

the ./tools/bin/rpt.sh does a request to the SPARQL wikidata endpoint to get a reverse tree of the parent taxa of an wikidata entity; It's very useful to get the list of all the species linked to a specific genus

rpt dample usage:

prerequisite: just suppose you have cloned or downloaded this repo in a local folder such as: ~/projects/incertae-sedis; then , the first time you use it, you have to make executable the bash script named rpt.sh

$ cd ~/projects/incertae-sedis/tools/bin  
$ chmod +x rpt.sh

Then siimply call it by passing a wikidata entity identifier of the genus you want to query; for exaple to get all the species of: Helianthus (Q26949)

$ cd ~/projects/incertae-sedis/tools/bin  
$ ./rpt.sh Q26949

rpt test

perfomance measured on sunday 20161023

time ./rpt.sh Q26949
real	0m0.512s
user	0m0.034s
sys	    0m0.025s

Documentation

TBD

Usage & Development

If you are considering developing a port for incertae sedis, please wait for the a more stable version. In the while consider Contributing to our open source projects on Github.

Disclaimer

The incertae-sedis project it is only a POC. It's obviously missing lots of features.

Please open issues to discuss any feature you want to be added, submit suggestions, or anything else... All contributions are welcome ;)

Issues

Feel free to submit issues and enhancement requests.

New issue

Contributing

follow the "fork-and-pull" Git workflow.

1. Fork the repo on GitHub
2. Clone the project to your own machine
3. Commit changes to your own branch
4. Push your work back up to your fork
5. Submit a Pull request so that we can review your changes

NOTE: Be sure to merge the latest from "upstream" before making a pull request!

Copyright and Licensing

BSD 2-Clause License

Questions

FAQ

TBD

Other questions

Feel free to Contact the author at StackOverflow