ritatam Goto Github PK
Name: Rita Tam
Type: User
Company: Australian National University
Bio: 🍄 genomics and evolution
Twitter: ritahltam
Location: Canberra
Name: Rita Tam
Type: User
Company: Australian National University
Bio: 🍄 genomics and evolution
Twitter: ritahltam
Location: Canberra
Collection of small scripts for bioinformatics tasks
snakemake pipeline for duplex basecalling with dorado on NCI
long-read amplicon consensus reconstruction tutorial in nanopore biosecurity workshop ANU 2022
A snakemake-automated pipeline that performs short-read mapping and variant calling using freebayes-parallel
A snakemake-automated pipeline that performs k-mer-based GWAS and downstream k-mer/read alignments
Pipelines and scripts to generate normalised transcript coverage profile for reference contigs
A snakemake-automated pipeline that performs alignment data processing upstream of phylogenomic analysis
A mini snakemake pipeline to batch construct consensus sequences from long nanopore amplicons w/ medaka for a set of samples
Rscripts for differential expression analysis of Triticum aestivum RNAseq using DESeq2 package
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