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immunespacecron

Tools and functions for generating useful artifacts for ImmuneSpace Reports and APIs

immunespacefrontendtools

immunespacemaintenance

Utility Package for ImmuneSpace Maintenance

immunespacer

An R Interface to the ImmuneSpace database portal

immunespacescripts

Scripts to be run on ImmuneSpace Rserve machines

imras

IMRAS aligned and quantified RNASeq data

labkeymodules

LabKey Modules for ImmuneSpace

luminex_r

luminexdata

Examples for LumiR

lumir

The LumiR package

mast

Tools and methods for analysis of single cell assay data in R

mastdata

Data for the MAST single-cell transcriptomics modeling and inference paper

mbenchmark

benchmarking the common matrix operations

mimosa

Mixture Models for Single Cell Assays

mimosa2

Baseline Adjusted Positivity Calls for Intracellular Cytokine Staining Data

mimosa_shiny

A prototype shiny interface to MIMOSA

ncdfflow

A package that provides ncdf based storage for flow cytometry data.

newell-cytof

Analysis that replicates Newell et al. (2012)'s CyTOF analysis and results.

npflow

Dirichlet process mixture of skew t-distributions for model based clustering of flow cytometry data

opencyto

A package that provides data analysis pipeline for flow cytometry.

opencytocl

OpenCyto Command Line Tools

opencytopreprocessing

Interface within LabKey for preprocessing FCS Files and FlowJo Workspaces.

opencytoqualitycontrol

Interface within LabKey for performing Quality Control tasks, detecting outliers etc.

opencytovisualization

Interface within LabKey for visualizing FCS Files with the ability to display gated data from a FlowJo Workspace.

paper-opencyto

pepbayes

Bayesian hierarchical modeling for subject-level response classification in peptide microarray immunoassays

pepbayesdata

Data package for pepBayes

pepdat

pepstat

Peptide microarray statistical analysis

pheatmap

Pretty heatmaps