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specification's Introduction

Beacon Schemas

What is a Beacon?

A Beacon is a web-accessible service that can be queried for information about a specific allele. A user of a Beacon can pose queries of the form Have you observed this nucleotide (e.g. C) at this genomic location (e.g. position 32,936,732 on chromosome 13)? to which the Beacon must respond with either yes or no.

Beacon Project

The Beacon project is a project to test the willingness of international sites to share genetic data in the simplest of all technical contexts. For more information, visit GA4GH Data Working Group.

Tools

A list of related tools and projects developed by the community is maintained on the Resources wiki page.

How to contribute

Guidelines for contributing to this repository are listed in the CONTRIBUTING.md document.

How to build

Prerequisites: Maven 3+, Java 1.6+.

To generate Java code, run mvn package and check the output in the target directory.

How to test

Prerequisites: Python 2.7 (incl. Pip 7+).

Install dependencies with pip install -r requirements.txt. To run the test suite, use nosetests -v.

More information

More information for developers is available on our wiki.

specification's People

Contributors

mcupak avatar sdelatorrep avatar juhtornr avatar mfiume avatar mbaudis avatar skeenan avatar david4096 avatar breatheandsmile avatar

Watchers

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