redmar-van-den-berg Goto Github PK

ansible-for-devops

Ansible examples from Ansible for DevOps.

archaeopteryx

ubuntu snap for archaeopteryx

arriba

Fast and accurate gene fusion detection from RNA-Seq data

bioconda-recipes

Conda recipes for the bioconda channel.

compare-aligners

covid-data

Scripts to parse the covid data released by the RIVM

covid-variants-nl

Estimate the weekly number of COVID infections for each variant

crimson

Bioinformatics tool outputs converter to JSON or YAML

cromwell

Workflow Execution Engine using WDL

crosscheck

Detect sample swaps with Picard CrosscheckFingerprints

dedup-region

Extract region coverage with and without UMI-deduplication

docker-singularity-snakemake

Docker image based on debian:buster that includes both singularity version 3 and snakemake 5.4

dynamisch-tarief

API for dynamic energy prices in the netherlands

eido

Validator for PEP objects

exonviz

Visualise exons and their reading frames

exonviz-web

Web interface for Exonviz

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fsnviz

Tool for plotting gene fusion events using Circos.

fuma

:dash::leopard: FuMa: reporting overlap in RNA-seq detected fusion genes

gtgt

Genetic Therapy Generator Toolkit

haploblock-shuffler

Shuffle phased and unphased variants

hifi-assembly

Assemble HiFi reads and identify genes of interest

humid

HUMID: reference free FastQ deduplication

kickstart.nvim

A launch point for your personal nvim configuration

kraken

Kraken taxonomic sequence classification system

lissero

In silico serotype prediction for Listeria monocytogenes

mistress

MLVA In Silico Typing Resource for Salmonella Strains (Validation paper is currently being written).

motif-edit

multi-package-containers

Testing building mulled containers for multi-requirement tools.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.