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newick_utils

shell tools for processing phylogenetic trees

nvchad

Blazing fast Neovim config providing solid defaults and a beautiful UI, enhancing your neovim experience.

peppy-feedstock

A conda-smithy repository for peppy.

pyblast

A wrapper class to simplify working with blast from python

pyrefflat

A refFlat parser in pure python

python-project

pyvcf

A Variant Call Format reader for Python.

readthedocs-tutorial

reference-free-deduplication

Benchmark reference free UMI deduplication tools

seamless

A single cell transcriptomics based deconvolution pipeline for Leukemia

shields

Concise, consistent, and legible badges in SVG and raster format

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

snakemake-module-example

Example of combining multiple Snakemake files as modules

snakemake-project

Example of a snakemake project

snakemake-tssv

snappy-playpen

A place to test, learn creating snaps and share best practices.

somatic-rna-variant-callers

Run multiple somatic RNA variant callers

srst2

Short Read Sequence Typing for Bacterial Pathogens

star_counts

test-umi-deduplication

Test umi deduplication with umi-tools and umi-trie

tssv

Targeted characterisation of short structural variation.

tssv-library

Create a library file for use with TTSV

ucsc-playground

Messing around with the UCSC API

umi-tools_pipelines

Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication

umic

A framework implementing a method for UMI deduplication and reads correction.

varda2_preprocessing

Extract coverage information from gVCF and variants from VCF files and output in tabular format.

vcf-tools

A collection of tools to manipulate vcf files

wdltool-autocomplete

Full bash autocompletion for wdltool