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Tim Putman's Projects

ontobio icon ontobio

python library for working with ontologies and ontology associations

reactionsearch icon reactionsearch

Federated query through multiple SPARQL endpoints for predicting chemical reactions based on microbiome composition

rheareactionparser icon rheareactionparser

Python class to retrieve and link data from http://www.rhea-db.org/. Generates a dictionary for each reaction consisting of rhea id, ec number and chebi ids for each reaction constiutent.

sequence_tools icon sequence_tools

.fastq reads containing variants from a draft genome are sequesterded, categorized and counted by variant.

single-read-mapping icon single-read-mapping

Pipeline for preparing and mapping *.fastq data to reference mapping genome of small, prokaryotic or viral genomes, with low diversity.

vue_autocomplete icon vue_autocomplete

autocomplete component for Monarchinitiative.org built with Vue.js version 2

wikidataintegrator icon wikidataintegrator

A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

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