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Pugh Lab's Projects

su2c-gsc-scrna icon su2c-gsc-scrna

Custom source code used in Richards, Whitley et al., Nature Cancer, 2021

swgs icon swgs

Snakemake workflow for shallow WGS analysis

viscap icon viscap

VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data. For algorithmic details, see Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.

viscapcancer icon viscapcancer

Tool for calling tumour-specific somatic copy number alterations from targeted sequencing data. This tool is based on the germline copy number variant caller published by Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.

wadingpool icon wadingpool

A shallow/low-pass whole-genome analaysis toolkit

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