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Python package of dynareadout for uploading to PyPI

License: zlib License

Python 84.38% Shell 15.62%

dyna python cae ls-dyna binout d3plot keyfile

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dynareadout_python's Issues

Mutiple files read (binout*) not working some times [Python]

Issue:
In some cases, while reading multiple binout file, not returning anything.
Not even showing any error.

Here I have shared my code and binout files.

binout0000.zip

Kindly check the issue.

Code:

import numpy as np
# import matplotlib.pyplot as plt
import csv
from dynareadout import Binout

bin_file_path = r"binout*"

def open_binout(file_path):
    bin_file = None
    try:
        bin_file = Binout(file_path)
    except RuntimeError as e:
        print(f"Failed to open binout at {file_path}: {e}")
        exit(1)
    return bin_file


bin_file = open_binout(bin_file_path)

node_ids_displacement = bin_file.read("rbdout/ids")
global_dx = bin_file.read("rbdout/global_dx")

num_timesteps_displacement = len(global_dx)
node_ids_custom = [6, 7]

force_data_array = np.array([[x_disp[n] for x_disp in global_dx] for n in range(len(node_ids_custom))])

result_curve = np.abs(force_data_array[0] - force_data_array[1])
#--------------------------------------------
node_ids_force = bin_file.read("bndout/velocity/rigidbodies/ids")
x_force = bin_file.read("bndout/velocity/rigidbodies/x_force")

num_timesteps_force = len(x_force)
x_force_array = np.array(x_force)


for n, node_id in enumerate(node_ids_force):
    force_data = [x_forc[n] for x_forc in x_force_array]
    # plt.plot(result_curve, force_data, label="Result")

# plt.xlabel('Displacement')
# plt.ylabel('Force')
# plt.legend()
# plt.title('Force vs Displacement')
# plt.show()

csv_data = np.column_stack((result_curve, force_data))
csv_header = ["Displacement", "Force"]

with open("force_vs_displacement.csv", mode="w", newline='') as file:
    writer = csv.writer(file)
    writer.writerow(csv_header)
    writer.writerows(csv_data)
print("File has been Written Successfully")

Issue with Linux machine [User Installation only allowed]

Kinldy help abou the issues. we did have full access to the linux machine.

pip install dynareadout
Defaulting to user installation because normal site-packages is not writeable
Collecting dynareadout
  Using cached dynareadout-23.12.tar.gz (266 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Installing backend dependencies ... done
  Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: dynareadout
  Building wheel for dynareadout (pyproject.toml) ... error
  ERROR: Command errored out with exit status 1:
   command: /usr/bin/python3 /home/siddharth.l/.local/lib/python3.6/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpv732drtn
       cwd: /tmp/pip-install-vnt99m3e/dynareadout_589c4ed632944d7bb328c99db15526e4
  Complete output (36 lines):
  running bdist_wheel
  running build
  running build_clib
  building 'dynareadout_c' library
  creating build
  creating build/temp.linux-x86_64-3.6
  creating build/temp.linux-x86_64-3.6/lib
  creating build/temp.linux-x86_64-3.6/lib/dynareadout
  creating build/temp.linux-x86_64-3.6/lib/dynareadout/src
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/binary_search.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/binary_search.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/binout_directory.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/binout_directory.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/binout_glob.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/binout_glob.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/binout_read.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/binout_read.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/binout.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/binout.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/d3_buffer.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/d3_buffer.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/d3plot_data.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/d3plot_data.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/d3plot_part_nodes.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/d3plot_part_nodes.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/d3plot_state.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/d3plot_state.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/d3plot.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/d3plot.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/extra_string.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/extra_string.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/include_transform.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/include_transform.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/key.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/key.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/line.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/line.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/multi_file.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/multi_file.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/path_view.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/path_view.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/path.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/path.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/string_builder.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/string_builder.o -ansi -w
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -Ilib/dynareadout/src -c lib/dynareadout/src/sync.c -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/sync.o -ansi -w
  ar rcs build/temp.linux-x86_64-3.6/libdynareadout_c.a build/temp.linux-x86_64-3.6/lib/dynareadout/src/binary_search.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/binout_directory.o build/t                                           emp.linux-x86_64-3.6/lib/dynareadout/src/binout_glob.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/binout_read.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/binout.o build/temp.linux-x86                                           _64-3.6/lib/dynareadout/src/d3_buffer.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/d3plot_data.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/d3plot_part_nodes.o build/temp.linux-x86_64-                                           3.6/lib/dynareadout/src/d3plot_state.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/d3plot.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/extra_string.o build/temp.linux-x86_64-3.6/lib/dyn                                           areadout/src/include_transform.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/key.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/line.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/mult                                           i_file.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/path_view.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/path.o build/temp.linux-x86_64-3.6/lib/dynareadout/src/string_builder.o build                                           /temp.linux-x86_64-3.6/lib/dynareadout/src/sync.o
  running build_ext
  building 'dynareadout' extension
  creating build/temp.linux-x86_64-3.6/lib/dynareadout/src/cpp
  creating build/temp.linux-x86_64-3.6/lib/dynareadout/src/python
  gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -m                                           tune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/tmp/pip-install-vnt99m3e/dynareadout_589c4ed632944d7bb328c99db15526e4/lib/pybind11/include -Ilib/dynareadout/src -Ilib/dynareadout/src/cpp -I/us                                           r/include/python3.6m -c lib/dynareadout/src/cpp/binout.cpp -o build/temp.linux-x86_64-3.6/lib/dynareadout/src/cpp/binout.o -std=c++17 -w
  gcc: error: unrecognized command line option ‘-std=c++17’
  error: command 'gcc' failed with exit status 1

ERROR: Failed building wheel for dynareadout
Failed to build dynareadout
ERROR: Could not build wheels for dynareadout, which is required to install pyproject.toml-based projects
'

Can't read card with empty fields

Hello, thanks for this great library!

I was trying to parse an old .key file, that has this keyword

*MAT_PIECEWISE_LINEAR_PLASTICITY
$      mid        ro         e        pr      sigy      etan      eppf      tdel
         1 7.830E-06     200.0       0.3     0.366               0.750

when I run this line to load all values:

            mid ,  ro,    e,   pr, sigy, etan, eppf, tdel = material.parse_whole([10, 10, 10, 10, 10, 10, 10, 10])

I get an error:

    mid ,  ro,    e,   pr, sigy, etan, eppf, tdel = node.parse_whole([10, 10, 10, 10, 10, 10, 10, 10])
                                                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
RuntimeError: Trying to parse 8 values out of card "         1 7.830E-06     200.0       0.3     0.366               0.750" with

If I add a 0 at the end of the card (so that tdel is defined) then all is good.

Can this be handled automatically?

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