rd_pipelines's People
rd_pipelines's Issues
`make` error
Hi,I got a error when running command make
, it seem miss modulefiles, how can I fix this problem; Are you willing to provide these modulefils. Thanks.
$ make
pushd wssd_sunk; make; popd
~/workdir/software/RD_pipelines/wssd_sunk ~/workdir/software/RD_pipelines
make[1]: Entering directory `/zfssz5/BC_PS/luoshizhi/software/RD_pipelines/wssd_sunk'
pushd calc_gc_depth; make; popd; cp calc_gc_depth/calc_gc_depth.so .
~/workdir/software/RD_pipelines/wssd_sunk/calc_gc_depth ~/workdir/software/RD_pipelines/wssd_sunk
make[2]: Entering directory `/zfssz5/BC_PS/luoshizhi/software/RD_pipelines/wssd_sunk/calc_gc_depth'
python setup.py build_ext --inplace
Traceback (most recent call last):
File "setup.py", line 2, in <module>
import numpy as np
ImportError: No module named numpy
make[2]: *** [ALL] Error 1
make[2]: Leaving directory `/zfssz5/BC_PS/luoshizhi/software/RD_pipelines/wssd_sunk/calc_gc_depth'
~/workdir/software/RD_pipelines/wssd_sunk
make[1]: Leaving directory `/zfssz5/BC_PS/luoshizhi/software/RD_pipelines/wssd_sunk'
~/workdir/software/RD_pipelines
pushd ssf_DTS_caller; make; popd
~/workdir/software/RD_pipelines/ssf_DTS_caller ~/workdir/software/RD_pipelines
make[1]: Entering directory `/zfssz5/BC_PS/luoshizhi/software/RD_pipelines/ssf_DTS_caller'
. ./modules.sh; python setup.py build_ext --inplace --include-dirs ./heap
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'gmp/5.0.2'
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'mpfr/3.1.0'
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'mpc/0.8.2'
ModuleCmd_Load.c(213):ERROR:105: Unable to locate a modulefile for 'gcc/4.9.1'
Traceback (most recent call last):
File "setup.py", line 4, in <module>
from Cython.Distutils import build_ext
ImportError: No module named Cython.Distutils
make[1]: *** [ALL] Error 1
make[1]: Leaving directory `/zfssz5/BC_PS/luoshizhi/software/RD_pipelines/ssf_DTS_caller'
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