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Name: Philippe Rocca-Serra
Type: User
Company: University of Oxford e-Research Centre
Location: Oxford
Name: Philippe Rocca-Serra
Type: User
Company: University of Oxford e-Research Centre
Location: Oxford
Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical environment, so that image content can be easily and automatically searched.
Motif finding algorithm and tool to find functionally relevant motifs in workflows.
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
Project code for BioHackathon Europe 2023.
The web application, model, database persistence, services package and web services for the BII. Led by Tim Booth (NERC), Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford) and Marco Brandizi (EMBL-EBI))
Metadata for curated CMSO datasets
ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
GitHub Action for Python Coveralls.io
new home is
Repository for metadata transformations and mapping for ingest into the bioCADDIE index
Documentation
Repository with exercises related to ISA
a placeholder
Repository to organize the further development of the Community Proposal to ELIXIR.
Convert a Google Drive Document to the Markdown format suitable for publishing.
The governance process and model for Project Jupyter
HMS LINCS ISA-Tab
Template for the creation of ISA-Tab files for the ACTION demonstrator project (with fake IDs)
ISA API - still under development!
ISA python API documentation
A ready to use plug&play ISA Model data-warehouse for meta and result data
The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).
ISAcreator is a Java desktop application which allows for creation and editing of ISATab files. Led by Eamonn Maguire and Philippe Rocca-Serra (Uni. of Oxford).
Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.
Example Jupyter notebooks using the ISA-API
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.