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Philippe Rocca-Serra's Projects

annotation-and-image-markup icon annotation-and-image-markup

Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical environment, so that image content can be easily and automatically searched.

automacron icon automacron

Motif finding algorithm and tool to find functionally relevant motifs in workflows.

bh20-seq-resource icon bh20-seq-resource

Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis

bioinvindex icon bioinvindex

The web application, model, database persistence, services package and web services for the BII. Led by Tim Booth (NERC), Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford) and Marco Brandizi (EMBL-EBI))

configuration-files icon configuration-files

ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

data-pipeline icon data-pipeline

Repository for metadata transformations and mapping for ingest into the bioCADDIE index

elixir-tox icon elixir-tox

Repository to organize the further development of the Community Proposal to ELIXIR.

governance icon governance

The governance process and model for Project Jupyter

isa-action-template icon isa-action-template

Template for the creation of ISA-Tab files for the ACTION demonstrator project (with fake IDs)

isaconfigurator icon isaconfigurator

The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).

isacreator icon isacreator

ISAcreator is a Java desktop application which allows for creation and editing of ISATab files. Led by Eamonn Maguire and Philippe Rocca-Serra (Uni. of Oxford).

isacreatorplugins icon isacreatorplugins

Plugins developed for use in the ISAcreator. They should be placed in a 'Plugins' directory in the ISAcreator build environment.

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