prismplp / prism Goto Github PK

probabilistic logic programming language for statistical modeling

Home Page: https://rjida.meijo-u.ac.jp/prism/

License: Other

Dockerfile 0.02% Shell 0.49% Batchfile 0.03% Python 1.49% HTML 4.79% CSS 0.02% Java 1.21% Makefile 0.40% Prolog 7.37% C 7.63% C++ 76.52% CMake 0.04%

probabilistic-models probabilistic-programming logic-programming probabilistic-neural-network

prism's People

Contributors

Stargazers

Watchers

Forkers

kojima-r atakemura

prism's Issues

Difficulties to compile on apple sillicon

Hi,
I've been trying to compile Prism on my mac M1 but there are many problems.
I can run all test suite you need.

Best,
Djamé

Supporting orthogonal parameterization

https://pytorch.org/docs/stable/generated/torch.nn.utils.parametrizations.orthogonal.html

geotorch might be useful
https://github.com/Lezcano/geotorch

macOSでmpprismを実行した時、linuxと異なるエラーが出る。

ubuntuでprism_mp_linux.bin、macOSでprism_mp_darwin.binをビルドした後、mpprismを実行した時、ほぼ同様のテキストがターミナルに出力されるが、macOSでは加えて

*** Error: getline(): not interactive, use stdio.

というエラーが出力される。

lapack版のMakefileに不備が有る。

/src/c/makefiles/Makefile_lapack.files の UP_OBJS と /src/c/up/Makefile_lapack.files の OBJS に差異が有る。
/src/c/up/Makefile_lapack.files の OBJS で、 /src/c/up 内に存在していないファイルが指定されている。(feature.$(O))
/src/c/up/Makefile_lapack.files の OBJS で、ファイル名の誤字と思われるものが有る。(crfviterbi.$(O))
/src/c/up/Makefile_lapack.files の OBJS で指定されているが、/src/c/up/Makefile_lapack.files の下端で make rule が指定されていないファイルが複数有る。

src/c/bp4prism/lib/bp4prism-cygwin.a に問題が有る可能性が有る。

[100%] Linking CXX executable prism_up_cygwin.exe
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x48): undefined reference to `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x48): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x60): undefined reference to `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x60): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x78): undefined reference to `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x78): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x90): undefined reference to `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x90): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0xa8): undefined reference to `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0xa8): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0xc0): more undefined references to `insert_cpred' follow
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0xc0): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0xd8): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0xf0): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x108): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x120): relocation truncated to fit: R_X86_64_PC32 against undefined symbol `insert_cpred'
CMakeFiles/prism_up_cygwin.dir/core/glue.c.o:glue.c:(.text+0x138): 追加の再配置オーバーフローは出力から除かれます
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0x3b7): undefined reference to `is_UNIFIABLE'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0x432): undefined reference to `is_IDENTICAL'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0x5a5): undefined reference to `floatval'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0x94a): undefined reference to `myquit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0x9e5): undefined reference to `myquit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0x9f0): undefined reference to `encodefloat1'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xa1b): undefined reference to `insert'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xa6d): undefined reference to `myquit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xb4b): undefined reference to `myquit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xb8d): undefined reference to `insert'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xc1b): undefined reference to `unify'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xc40): undefined reference to `bp_compare'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xc7c): undefined reference to `myquit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xd12): undefined reference to `bp_string_2_term'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xd76): undefined reference to `bp_term_2_string'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xdb9): undefined reference to `bp_call_term'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xdd9): undefined reference to `bp_call_term'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xe1c): undefined reference to `bp_mount_query_term'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xe3c): undefined reference to `bp_mount_query_term'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xe63): undefined reference to `bp_next_solution'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.text+0xea6): undefined reference to `write_term'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.curr_toam_status[.refptr.curr_toam_status]+0x0): undefined reference to `curr_toam_status'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.local_top[.refptr.local_top]+0x0): undefined reference to `local_top'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.heap_top[.refptr.heap_top]+0x0): undefined reference to `heap_top'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.arreg[.refptr.arreg]+0x0): undefined reference to `arreg'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.nil_sym[.refptr.nil_sym]+0x0): undefined reference to `nil_sym'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.bigint_psc[.refptr.bigint_psc]+0x0): undefined reference to `bigint_psc'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.float_psc[.refptr.float_psc]+0x0): undefined reference to `float_psc'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.addr_top_bit[.refptr.addr_top_bit]+0x0): undefined reference to `addr_top_bit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/bpx.c.o:bpx.c:(.rdata$.refptr.curr_out[.refptr.curr_out]+0x0): undefined reference to `curr_out'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/idtable.c.o:idtable.c:(.text+0x574): undefined reference to `unnumberVarTerm'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/termpool.c.o:termpool.c:(.text+0x70): undefined reference to `numberVarTermOpt'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/termpool.c.o:termpool.c:(.text+0x89): undefined reference to `quit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/termpool.c.o:termpool.c:(.text+0xc9c): undefined reference to `unifyNumberedTerms'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/termpool.c.o:termpool.c:(.text+0xec1): undefined reference to `quit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/termpool.c.o:termpool.c:(.rdata$.refptr.number_var_exception[.refptr.number_var_exception]+0x0): undefined reference to `number_var_exception'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/termpool.c.o:termpool.c:(.rdata$.refptr.global_var_num[.refptr.global_var_num]+0x0): undefined reference to `global_var_num'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/termpool.c.o:termpool.c:(.rdata$.refptr.trail_top[.refptr.trail_top]+0x0): undefined reference to `trail_top'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/core/termpool.c.o:termpool.c:(.rdata$.refptr.trail_up_addr[.refptr.trail_up_addr]+0x0): undefined reference to `trail_up_addr'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/graph.c.o:graph.c:(.text+0xace): undefined reference to `list_length'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/graph.c.o:graph.c:(.text+0xc15): undefined reference to `list_length'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/graph.c.o:graph.c:(.rdata$.refptr.illegal_arguments[.refptr.illegal_arguments]+0x0): undefined reference to `illegal_arguments'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/graph.c.o:graph.c:(.rdata$.refptr.exception[.refptr.exception]+0x0): undefined reference to `exception'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/em_preds.c.o:em_preds.c:(.rdata$.refptr.failure_atom[.refptr.failure_atom]+0x0): undefined reference to `failure_atom'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/em_ml.c.o:em_ml.c:(.rdata$.refptr.toam_signal_vec[.refptr.toam_signal_vec]+0x0): undefined reference to `toam_signal_vec'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/viterbi.c.o:viterbi.c:(.text+0x1610): undefined reference to `quit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/viterbi.c.o:viterbi.c:(.text+0x1647): undefined reference to `quit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/viterbi.c.o:viterbi.c:(.text+0x1cad): undefined reference to `quit'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: CMakeFiles/prism_up_cygwin.dir/up/util.c.o:util.c:(.rdata$.refptr.top[.refptr.top]+0x0): undefined reference to `top'
/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: /usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../lib/libcygwin.a(libcmain.o): in function `main':
/usr/src/debug/cygwin-3.1.4-1/winsup/cygwin/lib/libcmain.c:37: undefined reference to `WinMain'
collect2: エラー: ld はステータス 1 で終了しました
make[2]: *** [CMakeFiles/prism_up_cygwin.dir/build.make:794: prism_up_cygwin.exe] エラー 1
make[2]: ディレクトリ '/home/Seky1/prism_git/src/c/cmake' から出ます
make[1]: *** [CMakeFiles/Makefile2:73: CMakeFiles/prism_up_cygwin.dir/all] エラー 2
make[1]: ディレクトリ '/home/Seky1/prism_git/src/c/cmake' から出ます
make: *** [Makefile:130: all] エラー 2

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