popgenmethods / ldpop Goto Github PK

========================================================================================================= test session starts =========================================================================================================
platform linux -- Python 3.8.3, pytest-5.4.3, py-1.9.0, pluggy-0.13.1
rootdir: /panfs/roc/groups/9/morrellp/llei/software/pyrho
collected 0 items / 1 error                                                                                                                                                                                                           

=============================================================================================================== ERRORS ================================================================================================================
___________________________________________________________________________________________________ ERROR collecting tests/tests.py ___________________________________________________________________________________________________
pyrho/tests/tests.py:20: in <module>
    from pyrho.optimizer import _rose_alg, _stitch
/home/morrellp/llei/.local/lib/python3.8/site-packages/pyrho/optimizer.py:24: in <module>
    from pyrho.haplotype_reader import (genos_to_configs, parse_vcf_to_genos,
/home/morrellp/llei/.local/lib/python3.8/site-packages/pyrho/haplotype_reader.py:16: in <module>
    from cyvcf2 import VCF
/home/morrellp/llei/.local/lib/python3.8/site-packages/cyvcf2/__init__.py:1: in <module>
    from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness,
cyvcf2/cyvcf2.pyx:1: in init cyvcf2.cyvcf2
    ???
E   ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject
======================================================================================================= short test summary info =======================================================================================================
ERROR pyrho/tests/tests.py - ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
========================================================================================================== 1 error in 28.75s ==========================================================================================================