Repository for the Plant Experimental Conditions Ontology
License: Creative Commons Attribution 4.0 International
Definition: The treatment involving exposure of plant to cadmium as supplement to study various types of responses
Parent:
EO:0007189 chemical regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/30
Definition: The treatment involving exposure to limiting amounts of molybdenum
Parents:
EO:0007253 molybdenum nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/18
Definition: The treatment involving exposure of plant to sucrose as supplement to study various types of responses
Parent: sugar regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/11
Definition: The treatment suggesting the use of solid agar growth media for growing the plants or tissue cultured samples
Parent:
EO:0007262 solid growth media
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/45
Definition: The treatment involving exposure of plant to the necrotrophic fungus
Parent:
EO:0007233 Fungi
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/37
Definition: The treatment involving exposure of plant to chemicals or radiation resulting in perturbations to the genome
Parent:
EO:0007189 chemical regimen
EO:0007154 radiation quality regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/42
Definition: The treatment involving exposure to limiting amounts of phosphate
Parents:
phosphate regimen (also recently requested)
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/20
Definition: The treatment involving exposure of plant to the avirulent Pseudomonas syringae
Parent:
avirulent bacteria regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/34
Definition: The treatment involving exposure of plant to the pathogen
Parent:
EO:0007124 pest/pathogen/animal/plant environment
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/39
Definition: The treatment involving use of oxidative stress-inducing chemicals to study various types of responses on their extrinsic and/or intrinsic application
Parent:
EO:0007189 chemical regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/32
Parent term: Nitrogen fertilizer regimen
Definition: Treatment involving exposure of plant to a growth medium deficient in the macronutrient nitrogen to study various types of responses.
Synonym: Nitrogen starvation regimen
Reported by: huala
Original Ticket: obo/plant-environment-ontology-eo/2
Definition: The treatment involving exposure of plant to sugar as supplement to study various types of responses
Parent: EO:0007047 other nutrient regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/9
We propose adding a new upper level term to organize the hierarchy of plant treatments and distinguish them from the growing conditions and study types:
plant treatment (new EO:0001001): A plant environment (EO:0007359) involving the application of an abiotic or biotic treatment. (needs work)
Reported by: cooperl09
Original Ticket: obo/plant-environment-ontology-eo/48
Definition: The treatment involving exposure of plant to phosphate as supplement to study various types of responses
Parent: EO:0007047 other nutrient regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/7
Definition: The treatment involving the absence of sulfate
Parents:
sulfate regimen (also recently requested)
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/27
Definition: The treatment involving exposure to limiting amounts of magnesium
Parents:
EO:0007288 magnesium nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/17
new term - elevated carbon dioxide regiment
child of gaseous environment
Reported by: huala
Original Ticket: obo/plant-environment-ontology-eo/1
Definition: The treatment using ionizing radiation as a supplemental electromagnetic radiation
Parent:
EO:0007154 radiation quality regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/43
Definition: The treatment involving exposure to limiting amounts of glucose
Parents:
glucose regimen (also recently requested)
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/16
Definition: The treatment involving use of osmotic stress-inducing chemicals to study various types of responses on their extrinsic and/or intrinsic application
Parent:
EO:0007189 chemical regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/31
Definition: The treatment involving exposure of plant to nickel as supplement to study various types of responses
Parent: EO:0007047 other nutrient regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/6
This is formerly called "abiotic environment" but described mostly abiotic treatments
Current name and def'n:
abiotic environment (EO:0007191): The treatment involving an exposure to the abiotic/non-biological factors such as chemicals, location, growth conditions etc.
Proposed new name and def'n:
abiotic plant treatment (EO:0007191): A plant treatment (new EO:0001001) involving the application of non-biological chemical or physical factors. (needs work)
Reported by: cooperl09
Original Ticket: obo/plant-environment-ontology-eo/49
Definition: The treatment involving exposure of plant to the avirulent bacteria
Parent:
EO:0007246 Bacteria
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/33
Definition: The treatment involving the absence of or non-standard exposure to cold or sub-optimal air temperature utilized in the breaking of seed dormancy
Parent:
EO:0007174 cold air temperature regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/47
Definition: The treatment involving exposure to limiting amounts of boron
Parents:
EO:0007273 boron nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/15
Definition: The treatment involving the absence or exposure to limiting amounts of a plant nutrient
Parent: EO:0007189 chemical regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/12
Parent: Urea regimen (could also have 'nitrogen nutrient regimen' as a second parent)
Definition: Treatment involving the use of urea as the sole source of nitrogen to study various types of responses.
Reported by: huala
Original Ticket: obo/plant-environment-ontology-eo/3
Definition: The treatment involving use of light-dependent generation of reactive oxygen species to study various types of responses on their extrinsic and/or intrinsic application
Parent:
EO:0007196 light regimen
oxidative stress regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/44
Definition: The treatment involving exposure of plant to parasitic wasps
Parent:
EO:0007333 Insecta
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/38
Definition: The treatment involving the absence of iron
Parents:
EO:0007242 iron nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/14
Definition: The treatment involving exposure of plant to ammonium as supplement to study various types of responses
Parent: EO:0007047 other nutrient regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/5
Definition: The treatment involving exposure of plant to carbon dioxide as supplement to study various types of responses
Parent:
EO:0007023 gaseous environment
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/28
This term needs to be revised and renamed
Current definition:
plant environment ontology (EO:0007359): A set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.
Proposed revised name: plant environment
Proposed revised definition:
plant environment: Plant growing conditions, study types and/or treatments.
Proposed new comment:
These conditions can apply to a whole plant (PO:0000003), a plant population and/or a cultured plant cell (PO:0000005). Each growth facility such as field study, growth chamber, green house etc is a environment on its own, it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.
Reported by: lauramoore1859
Original Ticket: obo/plant-environment-ontology-eo/4
Definition: The treatment involving exposure to limiting amounts of potassium
Parents:
EO:0007293 potassium nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/21
Definition: The treatment involving the absence of phosphate
Parents:
phosphate regimen (also recently requested)
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/26
Definition: The treatment involving the absence of carbon
Parents:
EO:0007303 carbon nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/13
Definition: The treatment suggesting the use of vertically-oriented solid agar growth media for growing the plants or tissue cultured samples
Parent:
solid agar growth media (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/46
Definition: The treatment involving exposure of plant to the hemibiotrophic fungus
Parent:
EO:0007233 Fungi
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/36
Definition: The treatment using gamma radiation as a supplemental electromagnetic radiation
Parent:
EO:0007154 radiation quality regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/41
Definition: The treatment involving the absence of nitrogen
Parents:
EO:0007284 nitrogen nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/25
Definition: The treatment involving exposure of plant to sulfate as supplement to study various types of responses
Parent: EO:0007047 other nutrient regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/8
Definition: The treatment involving the absence of magnesium
Parents:
EO:0007288 magnesium nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/24
Definition: The treatment involving exposure of plant to chemicals or biological interactors that induce a defense response
Parent:
EO:0007124 pest/pathogen/animal/plant environment
EO:0007189 chemical regimen
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/35
Currently:
chemical regimen (EO:0007189): The treatment involving use of chemical(s) to study various types of responses on their extrinsic and/or intrinsic application.
Propose slight name change and modified def'n to make it a child of abiotic treatment.
chemical treatment (EO:0007189): An abiotic treatment (EO:0007191) involving the application of chemical(s).
Comment: Includes organic and inorganic chemicals
Definition can be improved once hierarchy is approved
Reported by: cooperl09
Original Ticket: obo/plant-environment-ontology-eo/50
Definition: The treatment involving exposure to limiting amounts of nitrogen
Parents:
EO:0007284 nitrogen nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/19
Definition: The treatment involving exposure of plant to ozone as supplement to study various types of responses
Parent:
EO:0007023 gaseous environment
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/29
Definition: The treatment involving exposure of plant to glucose as supplement to study various types of responses
Parent: sugar regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/10
Definition: The treatment involving exposure to limiting amounts of zinc
Parents:
EO:0007309 zinc nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/23
Definition: The treatment involving exposure of plant to the Pseudomonas syringae
Parent:
EO:0007246 Bacteria
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/40
Definition: The treatment involving exposure to limiting amounts of sulfur
Parents:
EO:0007295 sulfur nutrient regimen
limited nutrient regimen (also recently requested)
Reported by: lloydjo1
Original Ticket: obo/plant-environment-ontology-eo/22
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