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@aaschwanden: Right now this script (see the code below) puts the generated config file in the current directory. Do you think it would make more sense to put it in the output directory specified using the command-line option --o_dir? (I think it would.)

We can automatically run chmod g+rwx when they are created.

Right now they have names like job_1.3251934.pbspl1.nas.nasa.gov.

Adding a few characters identifying a run to the file name would make it a lot easier to re-submit a job that failed. (Something like job_rcp26_id001_1.3251934.pbspl1.nas.nasa.gov would do fine.)

The title says it all.

Right now all the jobs on Pleiades are called "cfd". Meaningful names would make it easier to interpret qstat output, for example.

See make_batch_header:

Generated run scripts should include a comment with the command used to generate this script and the version of the Python script that generated it (obtained using git describe).

This will make it easier to reproduce issues discovered when running these scripts.