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Are there phyla, classes, genera etc. that are associated with increasing disease status? Not sure if this can be sensibly done..
- for most probes there is no numeric scale on increasing disease status
- samples have been labeled by Goeser as 1,2,3 for increasing liver disease (not really great data for trend analysis, can look for differences between groups, and see if a differnce increases from healthy in comparison to second worst and healthy to worst group (which ones these are Dr. Goeser knows).
The vertical lines on the plot (i.e. figure 1c, figure S1) are actually not SD, instead its SE (dispersion of sample means around the population mean). Think I wrote in the MS that this is SD.
Correct falsely labeled sample, rerun analysed relatred to liver status
-has chao1 value of 173 - is not healthy, but is unknown
- how does alpha diversity change with relation to sample type?
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