Comments (1)
Thanks Thomas, I actually found this was an issue previously and have been restructuring the rule inputs as you mentioned using the script
option in place of the shell
option and utilising the R S4 objects. I'm currently unit testing the new code to make sure it completes but this has essentially been resolved. This will be fixed in the next release.
from swgs-absolutecn.
Related Issues (20)
- Compatibility with different reference genomes HOT 3
- Error using 30 kb bin HOT 19
- Incorporate a measure of TP53 MAF uncertainty during manual curation of fits HOT 4
- Paired-end data HOT 1
- User provided output paths without a trailing forward slash produce malformed paths HOT 1
- Edge case error with get_gene_bin function
- Environment installation error HOT 2
- Update QDNAseqmod HOT 4
- Error executing pipeline HOT 2
- How to cite use of this tool in publications? HOT 1
- proposed fix for collapse_rds function edge case, where it will not analyse a single file HOT 1
- More documentation for snakemake newbies?
- May wish to disambiguate combine function to avoid confusion with deprecated dplyr function
- output tables from ploidy_purity_search_standard_error.R are tsvs not csvs
- Empty BAM files generates an error in the gridsearch_filter rule HOT 6
- Indexing issue when invoking base::match in rdnaseq_rel_to_abs.R HOT 2
- Sample sheet schema does not test for unique sample IDs HOT 1
- Missing Slurm configuration file. HOT 1
- TP53 bin number is hard coded into the ploidy-purity search script HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from swgs-absolutecn.