phil9s Goto Github PK
Name: Philip Smith
Type: User
Company: CRUK-CI
Bio: Postdoctoral researcher in the Markowetz lab at CRUK cambridge institute.
Location: Cambridge, UK
Blog: www.markowetzlab.org
Philip Smith's Projects
association_tests
Bash and R scripts for performing association tests on genetic variants
cinfits
cnv_pipeline
A Pipeline and support scripts for calculating CNV calls using XHMM
epic-methylation-workflow
Project-specific workflow for epic methylaytion array analysis
gel-sig-workflow
medicc2-pipeline
pyclone-pipeline
qol-scripts
Some basic scripts to ease data analysis and quick look up requests
rcc_hereditary_cgp
Repository for scripts associated with the cancer panel sequencing of hereditary RCC paper
rcc_translocation
Code base used in the bioinformatic analysis in the associated research publication
scwrapper
A wrapper script for the score-client used for data acquisition from ICGC/PCAWG
swgs-absolutecn
Pipeline for the generation of absolute copy number profiles from shallow whole genome sequencing data
swgs-gistic
Snakemake pipeline for generation of GISTIC focal alteration frequencies from sWGS absolute copy number profiles
uk-covid-correlations
visualisation of correlations between UK COVID-19 cases and clinical events
variant_browser
variant_filter
Series of scripts for filtering variant calling format files
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