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A proof-of-concept library for motif analysis using MDL techniques.

License: MIT License

Java 87.40% Python 12.60%

motif-analysis motive proof nauty motif-discovery motif-counts motifs network-motifs network-analysis graph-analytics

motive's Introduction

motive

A proof-of-concept library for motif analysis using MDL techniques. It contains the methods described in the paper Compression as a Fast Measure of Network Motif Relevance.

Installation and use

Each release on github comes with a compiled JAR file which you can run as a command-line program. Download the latest one here. See the section examples below, for how to use it.

Calling the code

The command line provides some basic results, but to do real experiments, you will probably want to call the code directlyfrom your own program. The simplest way is to include it as a Maven dependency through jitpack. Just include the following repository in your pom.xml file:

    <repositories>
        <repository>
            <id>jitpack.io</id>
            <url>https://jitpack.io</url>
        </repository>
    </repositories>

and the following dependency:

	<dependency>
	    <groupId>com.github.pbloem</groupId>
	    <artifactId>motive</artifactId>
	    <version>v0.1.XXX</version> <!-- check http://jitpack.io/#pbloem/motive for the latest version -->
	</dependency>

Check the jitpack link above for linking from gradle/sbt/leiningen projects, and to see what the latest release is.

Have a look at the classes Compare and CompareLarge for hints on how to set up a motif experiment from within java code. For command line usage, see the next section.

Usage examples

Display usage information:

java -jar motive.jar --help

Run the "synthetic" experiment: create random graphs with injected motifs.

java -jar motive.jar --type synth --synth.repeats 3 --synth.n 50 --synth.m 600 --synth.instances 0,5,10

Run the "fast" experiment (ER model and EdgeList model) on a particular dataset, finding motifs of size up to (and including) 10:

java -jar motive.jar --type fast --file data.txt --minsize 3 --maxsize 10 --samples 1000000 --maxmotifs 30

The "full" experiment includes the precise DS model as well. This is a bit slower.

java -jar motive.jar --type full --file data.txt --minsize 3 --maxsize 5 --samples 100000 --maxmotifs 30

Input Data format

The default data format is a text file with a list of edges: each line should contain two nonnegative integers, separated by whitespace: indicating an edge between the two nodes indicated by the given indices. Any lines starting with '#' are ignored. If there is anything after these first two integers, it is ignored as well.

The indices are assumed to be consecutive, i.e. starting at zero, with no nonnegative integers unused. If your indices start at 100000, the parsed graph will also have (orphaned) nodes for all integers from 0 to 100000.

You can find some examples packaged with the Nodes library. Files from the KONECT repository should also work out of the box.

The GML format is also supported with the switch --filetype gml. This is not well tested, so your mileage may vary.

Large data

If your graph is large (in the order of millions of edges), you may need to use a disk-backed store. For this, the graph should be pre-loaded. This is done with the command

java -jar motive.jar --type preload --file data.txt

The graph will be loaded into a disk-backed database called graph.db. You can then run an experiment with the type fast.disk.

java -jar motive.jar --type fast.disk --file data.db

Make sure to use the -Xmx argument (before the -jar argument) to set the heap size as large as you can on both commands. For a node with 64 Gb of memory, we found that -Xmx56g was the largest to give stable results.

You may still get out of memory errors during the computation of the code lengths (after the sampling phase) if the graph is large. This happens if a large number of links need to be rewritten to compute the motif code (in which case the motif is likely poor anyway). To combat this add the switch

--fast.max-rw 500000

to the command. If a motif requires more links to be rewritten than this amount, it will be skipped (although it may still succeed with a lower nunber of instances). A warning will be written to the error log every time this happens.

Output format

The command line tool produces its primary output as a collection of text files. For each (potential) motif found, one .edgelist file is produced. This file captures only the structure of the motif, not its labels in the original graph. That is, if the motif has the shape o -> o <- o, then the corresponding edgelist file may look like

0 1
1 2

For each motif, there will be a CSV file containing its occurrences. If the motif has k nodes (i.e. k=3 in the example above), then each line in the occurrences file identifies a place where the motif occurs by providing a graph node integer (corresponding to the integers in the input file) for each node in the motif.

The files numbers.csv contains the compression ratios for each motifs. The columns are, in order, the motif frequencies, the compression ratios for the ER model, compression ratios for the EL model, and (if the full experiment is run) compression ratios for the DS model. In practice the EL model provides a good trade-off between speed and motif quality.

metadata.json contains some additional information, mostly required for producing the correct plot.

Plotting

The plots in the paper were produced using python scripts. Motive will copy these into the output directory and attempt to run them. This will fail if the correct dependencies are not installed. Here's a short recipe for getting the scripts to run:

Install Anaconda (the python 3 version)
run the command ```conda install matplotlib'''
Go to the output directory and run ```python plot.synthetic.py''' (or whichever python file was copied to the output directory).

If this doesn't work, make a ticket on github describing what went wrong, and we'll try to help you out.

Miscellaneous notes

The Nauty implementation, used for graph canonization is a re-implementation. It is not complete, and the real Nauty is likely much faster. If many samples of large motifs (eg. 12 nodes) are necessary, this will become the bottleneck. Up to 10 nodes, however, you should be able to take around a 25k 10-node samples per minute, even on commodity hardware.
If you get a memory error, increase your heap space by adding -Xmx3g before -jar. This sets the heap space to 3 gigabytes. Don't set the heap space to more memory than your machine has available (and leave at least 500m to 1000m for the system). If you still get memory errors, reduce the maximum motif size, the number of samples, or see if you can work with a smaller dataset (or move to a machine with more memory, of course).

motive's People

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motive's Issues

Exception when running synthetic experiment

using v0.1.9 I ran java -jar motive.jar --type synth --synth.repeats 3 --synth.n 50 --synth.m 600 --synth.instances 0,5,10 twice. Both times the command ended with an exception

Sep 12, 2016 7:14:05 PM nl.peterbloem.motive.exec.Run main
INFO: Using 4 concurrent threads
Sep 12, 2016 7:14:05 PM nl.peterbloem.motive.exec.Run main
INFO: Experiment type: synthetic
Sep 12, 2016 7:14:05 PM nl.peterbloem.motive.exec.Run main
INFO: Starting experiment.
21 [graph {_0 -- _4; _1 -- _4; _2 -- _4; _3 -- _4}, graph {_0 -- _4; _1 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _1 -- _4; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}, graph {_0 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}, graph {_0 -- _4; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _4 -- _3}, graph {_0 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}, graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _3 -- _4}, graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _3}, graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3}, graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _0 -- _3; _0 -- _2; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _3 -- _4}, graph {_0 -- _4; _0 -- _3; _0 -- _2; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}, graph {_0 -- _4; _0 -- _3; _0 -- _2; _0 -- _1; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}]
Sep 12, 2016 7:14:05 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Finished sampling subbed graph
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Graph reconstructed. nodes: 50, links: 600
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Sampling motifs
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Start sampling.
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 0 (0%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 250 (5%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 500 (10%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 750 (15%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1000 (20%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1250 (25%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1500 (30%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1750 (35%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2000 (40%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2250 (45%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2500 (50%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2750 (55%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3000 (60%)
Sep 12, 2016 7:14:06 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3250 (65%)
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3500 (70%)
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3750 (75%)
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4000 (80%)
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4250 (85%)
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4500 (90%)
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4750 (95%)
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Removing overlapping occurrences.
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Finished sampling motifs and removing overlaps.
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: baseline 1219.1769148253181
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1609.093086676946
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1796.675085322146
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1430.4401883920493
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1581.2624443163083
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1760.2799867160102
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1408.560351778375
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1781.8756743458507
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2156.7414468774737
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1603.151030597486
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1422.620047772839
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1594.2609809443998
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1768.9639636771153
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1417.022692799931
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1577.8822162868828
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1749.4770874628266
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1411.376765116699
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1574.516725109147
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1739.3028395271958
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1397.0707728601471
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1699.8638276406114
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2050.8944935889053
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1551.201418565472
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1386.3053317145855
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _4 -- _3}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1755.888494496495
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2129.1543075125032
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1583.9483193610395
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1408.5790575609135
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1730.6554170926158
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2093.411096029375
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1561.9066745504342
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1399.1728841626566
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1733.8692174392438
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2098.13865401994
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1574.6657244248738
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1412.8285856614127
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1718.4256984723654
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2118.434911747148
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1552.471001402855
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1403.8303752659108
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1721.3197971977456
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2066.0126643778135
Sep 12, 2016 7:14:07 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1561.3263280853482
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1399.4269365062828
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1746.9220253351314
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2125.202433195004
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1578.084115675753
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1410.0671260449385
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _3}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1579.9510431660062
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1772.0094866037186
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1402.2545013072029
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1714.923662009891
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2077.9277718076605
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1552.4253064204295
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1399.4811850771173
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1692.502396647746
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2030.7462040720386
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1537.755001793949
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1379.7222401200404
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1691.8134795485785
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2053.88650310024
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1548.2845256002454
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1388.6248036122327
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1257.1531252868672
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1708.8925948219028
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2013.7290450684632
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1542.982238235741
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1400.7420804355586
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1257.1531252868672
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1257.1531252868672
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1703.575064037755
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2050.352000156807
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1537.4430891701907
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1377.7277651578966
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1257.1531252868672
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1254.983200285425
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1698.2358159143314
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2025.7439262227517
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1543.0392045349208
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1399.1168382269332
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1254.983200285425
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _0 -- _1; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1251.6612721905376
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1720.2882893390197
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2075.284021633696
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1564.118827398904
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1408.1754536736005
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1251.6612721905376
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Finished sampling subbed graph
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Graph reconstructed. nodes: 50, links: 600
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Sampling motifs
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Start sampling.
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 0 (0%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 250 (5%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 500 (10%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 750 (15%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1000 (20%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1250 (25%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1500 (30%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1750 (35%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2000 (40%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2250 (45%)
Sep 12, 2016 7:14:08 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2500 (50%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2750 (55%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3000 (60%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3250 (65%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3500 (70%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3750 (75%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4000 (80%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4250 (85%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4500 (90%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4750 (95%)
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Removing overlapping occurrences.
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Finished sampling motifs and removing overlaps.
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: baseline 1219.1769148253181
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1644.8969823648952
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1857.1276317937607
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1447.6787969095171
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1805.590413626203
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2230.1898914953194
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1597.1306592708804
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1419.4890216864287
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1578.4421778198428
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1759.36635093298
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1404.0186353103413
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1594.5948750134355
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1809.7153482367162
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1421.2360592253347
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1794.3744829322445
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2196.066681275975
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1604.9710999765757
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1423.3609300557903
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1791.3867607317536
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2170.606090391164
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1607.1099369703736
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1422.5004946920012
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1753.1577334958997
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2125.893349849986
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1578.5014905426053
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1401.9642820897732
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _4 -- _3}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1594.0638294210069
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1757.0509975203959
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1414.844646886928
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1768.3544441617532
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2138.8557239318857
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1580.6247342555464
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1412.8639059621305
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1756.0077096129166
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2117.946714037536
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1583.3431026776939
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1410.6306547328486
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1809.7893579651934
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2159.2204578261217
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1617.8627670823328
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1433.2155516897076
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1736.7224157450205
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2107.81192335772
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1560.4590623433576
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1400.3569625721975
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1800.1594341884625
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2181.3360081045207
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1609.5157178312213
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1423.517389307512
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _3}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1606.729077052374
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1784.651382203347
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1422.2419943352172
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1738.4225721176897
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2120.723357659391
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1568.9984118182942
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1401.4847616890327
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1765.258884860125
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2103.4647639447917
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1591.3133468047822
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1406.3557511009947
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1743.014844185233
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2092.9759048860337
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1564.4592726484013
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1395.9928498726263
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1257.1531252868672
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1728.1074914367646
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2079.9359359503596
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1562.2866778250389
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1399.4188442673956
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1257.1531252868672
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1257.1531252868672
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1729.4481435098483
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2057.771961875744
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1566.1655580267216
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1386.2342159313362
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1257.1531252868672
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1254.983200285425
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1718.4280006549156
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2064.625511446649
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1562.624771074022
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1409.157668522526
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1254.983200285425
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _0 -- _1; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1251.6612721905376
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1755.8306918941375
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2079.2633805709506
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1590.2736290830492
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1410.2697097983826
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:09 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1251.6612721905376
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Finished sampling subbed graph
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Graph reconstructed. nodes: 50, links: 600
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Sampling motifs
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Start sampling.
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 0 (0%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 250 (5%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 500 (10%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 750 (15%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1000 (20%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1250 (25%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1500 (30%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 1750 (35%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2000 (40%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2250 (45%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2500 (50%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 2750 (55%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3000 (60%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3250 (65%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3500 (70%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 3750 (75%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4000 (80%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4250 (85%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4500 (90%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Samples finished: 4750 (95%)
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Removing overlapping occurrences.
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.UPlainMotifExtractor run
INFO: Finished sampling motifs and removing overlaps.
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: baseline 1219.1769148253181
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1447.5168012033196
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1649.8818563229745
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 3
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1782.2651377123148
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2169.545564338829
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1602.9049623056592
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1417.4086848719887
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1776.7975461989797
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2148.1251368682315
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1600.8282873507453
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1420.0239044601396
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1578.5446030366847
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1764.4223031422866
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1417.657903217288
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:10 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1744.8814460648098
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2157.33470987724
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1572.4925688480364
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1415.3819254437558
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1760.8081251725862
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2142.4378515354783
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1588.664772453462
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1413.1404384366306
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1730.5384236121
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2094.1386232663704
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1562.1398329643962
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1386.2207120565226
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _4 -- _3}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1766.5191753304773
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2143.9706943287365
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1587.407747325044
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1402.5355327261618
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1720.9427448856486
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2075.2322386699097
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1562.7620593021252
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1404.0122588468307
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1705.334743381847
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2066.641455408292
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1564.2576993455793
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1403.013729918574
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1766.3305361752787
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2125.2928464440774
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1574.4274169438424
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1406.3699671839047
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1739.6101976319828
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2106.134171494652
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1559.4215583767102
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1402.8014072815974
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1773.5441538199411
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2120.9091144991753
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1601.8707870954609
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1426.673796533874
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _3}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.6385521140376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1594.5492416978182
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1790.2916307116807
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1416.1116748472482
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.6385521140376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1747.680182188316
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2126.2544996362135
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1573.8537564688675
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1419.1127410444203
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1259.3755177082037
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1750.9973684213292
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2100.4049296595135
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1572.0658253292181
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1404.3132228342906
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1258.568162786146
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1730.9077157780891
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2090.481717228258
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1561.4152982541837
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1411.433530429552
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1258.568162786146
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1257.1531252868672
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1704.562084674739
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2061.095842036737
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1534.3032810694185
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1399.2237622631087
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1257.1531252868672
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1257.1531252868672
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1712.729807272502
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2081.683945540495
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1541.5512310580164
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1396.009937834694
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1257.1531252868672
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1254.983200285425
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1710.2820192465788
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 5 occurrences: 2027.5307469883073
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1550.6653656040778
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1392.8104991421544
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 5
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1254.983200285425
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: Analysing sub: graph {_0 -- _4; _0 -- _3; _0 -- _2; _0 -- _1; _1 -- _4; _1 -- _3; _1 -- _2; _2 -- _4; _2 -- _3; _3 -- _4}
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 0 occurrences: 1251.6612721905376
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 2 occurrences: 1581.880209450823
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 3 occurrences: 1751.1344852710952
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi sample
INFO: compression at 1 occurrences: 1414.4966768375239
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.MotifSearchModel$FindPhi <init>
INFO: Search finished. Samples taken: 4
Sep 12, 2016 7:14:11 PM nl.peterbloem.motive.exec.Synthetic run
INFO: motif size: 1251.6612721905376
Exception in thread "main" java.lang.IllegalArgumentException: Argument k (570) must be non-negative and smaller than size (435)
    at nl.peterbloem.kit.Functions.sample(Functions.java:599)
    at org.nodes.random.RandomGraphs.random(RandomGraphs.java:85)
    at nl.peterbloem.motive.exec.Synthetic.run(Synthetic.java:170)
    at nl.peterbloem.motive.exec.Synthetic.main(Synthetic.java:113)
    at nl.peterbloem.motive.exec.Run.main(Run.java:166)

An Undirected Graph?

I have a graph with 10K nodes and 250K edges. Here's the output from a full (slow) experiment:
..
INFO: Using 40 concurrent threads
May 07, 2022 1:12:34 AM nl.peterbloem.motive.exec.Run main
INFO: Experiment type: full
May 07, 2022 1:12:35 AM org.nodes.data.Data edgeListDirectedUnlabeledSimple
INFO: Graph loaded (n=10633, l=251393).
May 07, 2022 1:12:35 AM org.nodes.data.Data edgeListDirectedUnlabeledSimple
INFO: Sorting
May 07, 2022 1:12:35 AM org.nodes.data.Data edgeListDirectedUnlabeledSimple
INFO: Compacting
May 07, 2022 1:12:35 AM org.nodes.data.Data edgeListDirectedUnlabeledSimple
INFO: Done
May 07, 2022 1:12:35 AM nl.peterbloem.motive.exec.Run main
INFO: Starting experiment.
May 07, 2022 1:12:35 AM nl.peterbloem.motive.exec.Compare main
INFO: Concurrent threads: 16 for sampling, 24 for computing motif scores.
May 07, 2022 1:12:35 AM nl.peterbloem.motive.exec.Compare main
INFO: Threads available: 40
May 07, 2022 1:12:35 AM nl.peterbloem.motive.exec.Compare main
INFO: Is data directed? : true (class org.nodes.LightDGraph)
..

I would like to turn off the TRUE on the last line, this is NOT a directed graph , and I'd like it to be treated as such?
Any ideas which flag may do this?

Thanks,
-Gita

Produce instances for each motif with output from command line

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