pbagos / mage Goto Github PK

Hi ,
I've been using this MAGE tool, and unfortunately, I've run into a bit of a hiccup. It seems like the tool is not working as expected, and I need help to troubleshoot the issue.
I've checked the documentation, but I'm still having trouble pinpointing the issue.
Here i attached the error i got

(base) maria@maria-VirtualBox:~/mage-master$ python mage.py -c conf.txt -o results

MAGE :: Meta-Analysis of Gene Expression

Version 1.0.4; December 2022

Copyright (C) 2021 Pantelis Bagos

Freely distributed under the GNU General Public Licence (GPLv3)

Preparing System Arguments

Preparing System Configuration (conf.txt)

Loading File data

['study10.txt', 'study9.txt', 'study8.txt', 'a1.txt', 'a4.txt', 'study6.txt', 'study2.txt', 'a2.txt', 'study4.txt', 'study5.txt', 'a3.txt', 'study7.txt', 'study3.txt', 'study1.txt']

Meta-analysis started

Traceback (most recent call last):

File "/home/maria/mage-master/mage.py", line 120, in

metanalysis_df = meta_analysis.run(settings, data)

File "/home/maria/mage-master/meta_analysis.py", line 1241, in run

meta_analysis_df = calc_metadata(expressions_team1, expressions_team2, alpha)

File "/home/maria/mage-master/meta_analysis.py", line 272, in calc_metadata

main(text, settings)

File "/home/maria/mage-master/meta_analysis.py", line 773, in main

studies = d.getdata(stys)  # load data

File "/home/maria/mage-master/PythonMeta/core.py", line 135, in getdata

raise Exception(Err)

Exception: error.(no data loaded)