cmake -B out
cmake --build out
for clang++ use
cmake -DCMAKE_C_COMPILER=/usr/bin/clang -DCMAKE_CXX_COMPILER=/usr/bin/clang++ -GNinja -DCMAKE_BUILD_TYPE=Release -B out
./out/CmdRunner -SIM Jaccard -DATA data/hg19/expr.csv
valgrind --tool=massif --time-unit=ms ./out/CmdRunner -SIM Jaccard -DATA data/hg19/expr.csv
for R
R -d "valgrind --tool=massif --time-unit=ms" --vanilla < your_script.R
PBMC dataset can be found here https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k
Our binary takes datasets in binarized format, you can find under scripts/CSVmanip, different python scripts which will delete cells/genes names and binarize data