paulwessel / gsfml

Global Seafloor Fabric and Magnetic Lineations (GSFML) Project

Global Seafloor Fabric and Magnetic Lineations (GSFML) Project

This information is for those who wish to look around and use GSFML. It is mostly for gurus as regular users can obtain data from the GSFML website and install supplemental tools from GMT.

To check out the GSFML project from the subversion server, run

git clone https://github.com/PaulWessel/gsfml.git

Files: README.md: This file. Makefile: Used to run top-level commands like building and deleting releases in zip, tar, kmz formats.

Directories (More information can be found in README.

in each directory) ADMIN: Use for the GSFML administrator to deal with the ftp and website as well as in the processing of new data submitted for inclusion in one of the three data bases. TOOLS: Contains the GMT5.2 gsfml supplement used to analyze and manipulate both FZ and ML data. FZDATA: Holds the repository FZ databases and release-building scripts. MLDATA: Holds the repository ML databases and release-building scripts. HELLDATA: Holds the repository HELL databases and release-building scripts.

gsfml's Issues

Trouble building with CMake after long hiatus

Wonder if someone knows what these Cmake errors are caused by. It has been several macOS version since I last tried to build gsfml so probably needing some updates. Running make config in the TOOLS directory (create build directory and run cmake) yields this output:

make config
mkdir -p build
(cd build; cmake -DCMAKE_INSTALL_PREFIX=gsfml -DCMAKE_BUILD_TYPE=Release ..)
CMake Warning at /opt/local/share/cmake-3.24/Modules/Platform/Darwin-Initialize.cmake:303 (message):
  Ignoring CMAKE_OSX_SYSROOT value:

   /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.1.sdk

  because the directory does not exist.
Call Stack (most recent call first):
  /opt/local/share/cmake-3.24/Modules/CMakeSystemSpecificInitialize.cmake:21 (include)
  CMakeLists.txt:32 (project)


-- The C compiler identification is AppleClang 14.0.3.14030022
-- The CXX compiler identification is AppleClang 14.0.3.14030022
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - failed
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc - broken
CMake Error at /opt/local/share/cmake-3.24/Modules/CMakeTestCCompiler.cmake:69 (message):
  The C compiler

    "/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc"

  is not able to compile a simple test program.

  It fails with the following output:

    Change Dir: /Users/pwessel/UH/RESEARCH/CVSPROJECTS/GMTdev/gsfml/TOOLS/build/CMakeFiles/CMakeTmp
    
    Run Build Command(s):/opt/local/bin/gmake -f Makefile cmTC_b1040/fast && gmake[1]: Entering directory '/Users/pwessel/UH/RESEARCH/CVSPROJECTS/GMTdev/gsfml/TOOLS/build/CMakeFiles/CMakeTmp'
    /opt/local/bin/gmake  -f CMakeFiles/cmTC_b1040.dir/build.make CMakeFiles/cmTC_b1040.dir/build
    gmake[2]: Entering directory '/Users/pwessel/UH/RESEARCH/CVSPROJECTS/GMTdev/gsfml/TOOLS/build/CMakeFiles/CMakeTmp'
    Building C object CMakeFiles/cmTC_b1040.dir/testCCompiler.c.o
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc   -arch arm64 -MD -MT CMakeFiles/cmTC_b1040.dir/testCCompiler.c.o -MF CMakeFiles/cmTC_b1040.dir/testCCompiler.c.o.d -o CMakeFiles/cmTC_b1040.dir/testCCompiler.c.o -c /Users/pwessel/UH/RESEARCH/CVSPROJECTS/GMTdev/gsfml/TOOLS/build/CMakeFiles/CMakeTmp/testCCompiler.c
    Linking C executable cmTC_b1040
    /opt/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_b1040.dir/link.txt --verbose=1
    /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc  -arch arm64 -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTC_b1040.dir/testCCompiler.c.o -o cmTC_b1040 
    ld: library not found for -lSystem
    clang: error: linker command failed with exit code 1 (use -v to see invocation)
    gmake[2]: *** [CMakeFiles/cmTC_b1040.dir/build.make:100: cmTC_b1040] Error 1
    gmake[2]: Leaving directory '/Users/pwessel/UH/RESEARCH/CVSPROJECTS/GMTdev/gsfml/TOOLS/build/CMakeFiles/CMakeTmp'
    gmake[1]: *** [Makefile:127: cmTC_b1040/fast] Error 2
    gmake[1]: Leaving directory '/Users/pwessel/UH/RESEARCH/CVSPROJECTS/GMTdev/gsfml/TOOLS/build/CMakeFiles/CMakeTmp'
    
    

  

  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:32 (project)


-- Configuring incomplete, errors occurred!
See also "/Users/pwessel/UH/RESEARCH/CVSPROJECTS/GMTdev/gsfml/TOOLS/build/CMakeFiles/CMakeOutput.log".
See also "/Users/pwessel/UH/RESEARCH/CVSPROJECTS/GMTdev/gsfml/TOOLS/build/CMakeFiles/CMakeError.log".
make: *** [config] Error 1

Two missing images

After running make site, there are still two images missing.

http://www.soest.hawaii.edu/PT/soest_uhm_transp.png
http://www.soest.hawaii.edu/PT/logo-nsf.png

Missing ridge.txt

The file ridge.txt is used in MLDATA/pick_fig.sh. But I could not find the file.

MLDATA/pick_fig.sh:gmt psxy -R -J -O -K ridge.txt -W0.5p >> $ps

'make map' produced blank GSFML_map.pdf and GSFML_map_small.jpg

See the log below.

GSFML_map.pdf
make-map.log