p2m2 / ep2m2 Goto Github PK

• proteger la branche main

Add, in database, compound table

We need 3 tables

• 1. COMPOUND → ref of compound

  • id SERIAL
  • name VARCHAR(255) UNIQUE
  • URL VARCHAR(255)
  • description TEXTAREA

Use Vuetify instead of Nuxt/UI

Nuxt/UI have issue with table
Vuetify sound like more mature.

Replace all component Nuxt/ui by vuetify

• Add Upload file
• Read File
• Extract information of file
• • Name
• • Size
• • Type
• Show summary in table

Create default layout

This layout is a banner. Banner contain icon, language button, help button and logout button.

• Documented the layout
• Write tests of default layout
• create default layout
• Delete component BannerMain and ExtrasNav

In this page user can change email and password.
The administrator can add/delete user.

For this page, I think change file structure to use route mechanism provide by Nuxt.
Add in database user's rules.

Basic wireframe

Create wireframe for first part of web site.
Content:

• buttons to add files
• buttons to delete files
• list of file added
• button to extract

Add table MACHINE

This table is references of machine.

It contains:

• id → SERIAL PRIMARY KEY
• name → VARCHAR 255
• id_techno → SERIAL Foreign key of techno table
• description → Text

Modify repository's structure to try respect format provide by metaboHub

"Telecharger" devrait etre "Importer" pour plus de clarter

Create Help menu

We have a link to open directly a help page.

This page contain :

• What's a project
• Quick start
• Manage project
• → New Project
• →Modify Project
• Basic Base compound Metabolic
• → Add basic compound
• → Add analyzer
• → Add fitting
• Index

Write Readme

create session user

Manage only one file for initialize database

./db/init.js => just read ./db/init.sql

Un projet contient un ensemble de fichier "Run" à intégrer dans un unique CSV

Implemented skeleton defined in wireframe

connection to database don't close

Error message in container ep2m2-web:

[nuxt] [request error] [unhandled] [500] sorry, too many clients already

Reproduction:

1. Start web site
2. Use it several time
   => impossible to open web site

Tabs to navigate between project and series.
We have two tabs

1. To go project page
2. To go series page

For that we use a layout.

• Write documentation
• Write test
• Create the layout

Note:
We have a layout in a layout (the navigate layout in default layout)

Add tutorial

This tutorial explain quickly how create a project add export it.

It is:

• interactive
• open at first connection
• accessing in help menu

Become REUSE-compliant from reuse.software

• Create reuse branch (5 min)
• Install reuse (10 min)
• Add MIT licence with reuse (10 min)
• Add copyright and licensing information to each file (20 min)
• Confirm REUSE compliance (10 min)

REUSE-compliante CI

Add check merge request is REUSE-compliante with yaml (120 min)

• Execute before merge
• Run REUSE check
• Block merge if check is fail

trop dangereux dans le cadre de plsueiur sporjet

Add a legend to know the action of each button.

Rename repository / project

TaMAMa

→ Target Metabolic Analyse Manager

• Un seul fichier en extraction.
• Si plusieurs fichiers , c est la fusion de tout les fichiers qui doit etre extrait (donc un unique csv)

Reset button in project box

Add button in project to cancel modification but stay in project.

• ajouter une description courte
• badge couverture
• badge test

Il faudrait une gestion des langues à prendre en compte des le debut du projet

Add component to manage compound.

The component provide:

• Visualization of all compound in database with search
• Add new compound
• Delete compound not used yet
• Archive compound

Ajouter un lien vers l'ajout d'issue

Dès la page de login

miss comments