Comments (1)
oschwengers
commented on August 18, 2024
1
Hi @ohickl ,
thank you very much for reporting! I just took a deeper look into this and found a wrong assumption that I made for the CRISPR parser of PILER-CR.
I wrongly assumed that all CRISPR spacers are of length N>=10. But, in your example, the CRISPR spacer is of length 8. Because of this, the regex didn't match to the result file. I pushed a PR with a fix. I'll run some tests and release a patch release, soon - hopefully by the end of this or next week.
Thanks again!
from bakta.
Related Issues (20)
- tRNAscan-SE slow with multiple threads HOT 3
- PSC failed! diamond-error-code=-11 HOT 2
- Bakta Web Does Not Work HOT 6
- Diamond Error -9 HOT 3
- Is there a way to deactivate the overlap detection so bakta does not filter my input proteins? HOT 3
- Inquiry on CDS annotation HOT 2
- pyhmmer not found HOT 14
- pyrodigal has no attribute 'OrfFinder' HOT 11
- (Re-)Generating bakta outputs from the JSON only
- Bakta web version ignores translation table change HOT 1
- reproducibility - amrfinderplus-db HOT 2
- Issue with trnascan-SE and bakta v1.9.4 HOT 1
- Addition of custom codon table/improve 'rare' start codons prediction HOT 2
- Option for trusted HMMs
- .conda/envs/bakta/lib/python3.10/site-packages/bakta/main.py", line 150, in main genome['features'][bc.FEATURE_T_RNA] = t_rna.predict_t_rnas(genome, contigs_path)
- tRNAscan-SE issue on HPC
- Question regarding summary stats generation
- conda install did not install bakta_db HOT 2
- option to include scores in bakta output
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from bakta.