Name: Oliver Schwengers
Type: User
Company: @ag-computational-bio - JLU Giessen
Bio: Microbial bioinformatics, WGS bacteria, plasmids, PostDoc, father of 2, husband, astrophotographer
Twitter: oschwengers1
Location: Giessen, Germany
Oliver Schwengers's Projects
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
A tool for drawing ANI clustermap between all-vs-all microbial genomes using fastANI & seaborn
Personal website, portfolio, blog and brain dumpster.
A scalable bacterial genome assembly, annotation and analysis pipeline
Assembly statistic visualisation
A curated list of awesome Bioinformatics libraries and software.
A synthesis of bacterial and archaeal phenotypic trait data
A flexible pipeline for complete analysis of bacterial genomes
Visualize microbial evolution at the SNP level!
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Conda recipes for the bioconda channel.
Official git repository for Biopython (originally converted from CVS)
A script for comparing old vs new versions of genome annotations
Benchmark datasets for WGS analysis
Ten Quick Tips for Deep Learning in Biology
DeepSig - Predictor of signal peptides in proteins based on deep learning
DNA plotting library for Python
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A quality control analysis tool for high throughput sequencing data
Genomic data science specialization
:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Automated long-read first bacterial genome assembly pipeline implemented in Snakemake using Snaketool.
Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)
SVG based genome viewer written in javascript using D3
Repository containing up-to-date definitions and models for the detection of macromolecular systems with MacSyFinder.
Microbial Genome Circular plotting tool using Circos
Jekyll Template - Mediumish
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent