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View Code? Open in Web Editor NEWA Neo4j Plugin for Handling HL7 FHIR Data
License: GNU General Public License v3.0
A Neo4j Plugin for Handling HL7 FHIR Data
License: GNU General Public License v3.0
Unable to load FHIR bundle data using CyFHIR plugin.
Steps Followed -
Added CyFHIR to $NEO4J_HOME/plugins folder
Added APOC to $NEO4J_HOME/plugins folder
In $NEO4J_HOME/conf/neo4j.conf added apoc and cyfhir as unrestricted plugins NEO4J_dbms_security_procedu res_unrestricted: apoc.,cyfhir.
Restarted the server
Added escape chars to all double quotes in the JSON by executing the below code
import json,re
f = open('Agustin529_Ontiveros947_fe08e9ee-b231-93d9-0554-5b5540c9335b.json',)
bundle = json.load(f)
bundle_string = json.dumps(bundle)
bundle_string_formatted = re.sub(r'"', '\"', bundle_string)
out_file = open("myfile.json", "w")
json.dump(bundle_string_formatted, out_file, indent = 6)
Executed the command - CALL cyfhir.resource.load("file:///myfile.json", {validation: true, version: "r4"}) to load json
Input FHIR Bundle - https://github.com/Optum/CyFHIR/blob/main/demo/synthea-bundles/Agustin529_Ontiveros947_fe08e9ee-b231-93d9-0554-5b5540c9335b.json
In Realtime , Cypher queries can send data elements into configured hooks.
I can discuss further and would like to contribute.Thanks!!
CALL apoc.path.expand(entry, ">|relationship", "-entry", 0, 999) YIELD path
WITH collect(path) AS paths
Call apoc.convert.toTree(paths) YIELD value
RETURN cyfhir.buildBundle(COLLECT(value))
Add unit tests for existing code and document for future reference
Allow reading/writing for single resource single resource, link references
Neo4j uses a .grass file to style nodes
Should cover all nodes possible by creating file programmatically
Preferred: Validation in plugin
If it cannot take place in plugin, have it take place in express server
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