Comments (2)
Good point. The h gate in the ca channel is different, it uses a custom type which doesn't have a standard Hodgkin Huxley description involving timeCourse/steadyState, but instead is a function of [Ca2+].
I've updated the IPython notebook to reflect this.
from muscle_model.
Error is now gone. Thank you for updating the IPython notebook.
from muscle_model.
Related Issues (20)
- Draft workflow outline for validation tests
- Write doctests for muscle_model HOT 16
- Write Pytest tests for muscle_model HOT 1
- Write SciUnit validation tests for muscle_model HOT 10
- Document muscle_model testing framework
- Digitize the figure mentioned in #31 HOT 7
- Write a script that takes the digitized figure and the simulation output and calculates the error/difference
- Write a script that generates an overlaid image of the simulated and digitized data HOT 1
- Turn the error-generating script into a SciUnit test
- Integrate the test in the test suite being run on TravisCI
- Add jneuroML to documentation here HOT 3
- Replace jnml in scripts with pynml? HOT 2
- The same conductance for different channels in nml files HOT 6
- Check for performance regressions in testing suite HOT 1
- Create tests to catch performance regressions in specific functions
- Write PyTest tests for basic command line runs HOT 12
- Delete or archive unused branches HOT 1
- Add to the readme to create a well cited and reasoned case for the ideal set of ion channels that should be in the muscle model HOT 8
- SciUnit test to reproduce additional muscle patch clamp data in the muscle model HOT 7
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