Comments (4)
sfchen
commented on August 18, 2024
Currently I have no time to make OpenGene adapt to Julia 1.0.
But you can give me your gene list, then I can generate the fusion file for you.
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sfchen
commented on August 18, 2024
You can paste or upload your gene list here, or send to me by email: [email protected]
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yahiaBioinfo
commented on August 18, 2024
Thank you for your help, here my gene list (I need the fusion on hg19) ;
ALK
CAMTA1
CCNB3
CIC
EPC1
EWSR1
FOXO1
FUS
GLI1
HMGA2
JAZF1
MEAF6
MKL2
NCOA2
NTRK3
PDGFB
PLAG1
ROS1
SS18
STAT6
TAF15
TCF12
TFE3
TFG
USP6
YWHAE
thanks
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sfchen
commented on August 18, 2024
Just sent u by email.
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Related Issues (20)
- make: *** No rule to make target 'install'. Stop. HOT 2
- Looking for "Encompassing Reads" in the output.
- gen_fusion_file.jl is out of date HOT 2
- Fusion-making .py script does not take into account gene orientation HOT 8
- GeneFuse ignores fusions in TCF3 HOT 3
- while running Stuck HOT 10
- Can not get the fusions with the testdata HOT 1
- std::bad_alloc
- How to get VAF info from genefuse results?
- GeneFuse on RNA-seq
- calculate genefuse fusion freq
- tmprss-erg
- GOPC_ENST00000052569.6 location
- how to filter fusion result
- JSON output corrupted due to a not escaped double-quotes character HOT 1
- the data size of raw data effected fusion result
- different gene set gives different results for same fusion
- IGH-BCL2 is not detected but bam is supported HOT 1
- Maybe a typo in the source code, `abs(left.startGP.position) < abs(left.startGP.position)`?
- Multiple runs show different results.
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