Comments (1)
granek
commented on June 16, 2024
1
I had the same problem! The fusion files in the repo are not compatible with the NCBI version of hg19 that is linked in the README.
The fusion files have chromosome names that start with "chr", but the genome from NCBI just uses the chromosome number (e.g. "chr15" vs "15").
The easiest fix is to download hg19 from UCSC: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz
from genefuse.
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from genefuse.