openeyes / oe_installer Goto Github PK

hi
I was able to get Openeyes installed in Vagrant box and am able to log in into the system through localhost:8888

The problem i am facing now is that i am unable to enter any data in the system. eg. can't enter any new patients of any new site to the system.

i checked the permission of the /var/www/openeyes/assets, cache and /protected directories with the "stat" command. all the directories show access : 0777 drwxrwxrwx.

can you pls help

Hi I did the installation as detailed without any errors. However when i go to my browser and type localhost:8888 i get the following error

symlink(): Protocol error

/var/www/openeyes/protected/yii/framework/web/CAssetManager.php(242)

230 elseif(@filemtime($dstFile)<@filemtime($src))
231 {
232 copy($src,$dstFile);
233 @chmod($dstFile,$this->newFileMode);
234 }
235
236 return $this->_published[$path]=$this->getBaseUrl()."/$dir/$fileName";
237 }
238 elseif(is_dir($src))
239 {
240 if($this->linkAssets && !is_dir($dstDir))
241 {
242 symlink($src,$dstDir);
243 }
244 elseif(!is_dir($dstDir) || $forceCopy)
245 {
246 CFileHelper::copyDirectory($src,$dstDir,array(
247 'exclude'=>$this->excludeFiles,
248 'level'=>$level,
249 'newDirMode'=>$this->newDirMode,
250 'newFileMode'=>$this->newFileMode,
251 ));
252 }
253
254 return $this->_published[$path]=$this->getBaseUrl().'/'.$dir;

Can any one please help?

The vagrant up command results in the following errors when setting up the repository.
I am able to clone the following

1. openeyes
2. eyedraw
3. newblue

But when cloning the following results in failure

1. sample
2. IOLMasterImport

Also running the install-oe.sh results in error at line 320
/vagrant/install/install-oe.sh: line 320: --no-migrate: command not found

If I revert back to the previous version of install-oe.sh, everything works fine.

Logs attached.
oelogs.txt

Solved: Take a look to https://github.com/openeyes/OpenEyes/issues/932

Dear OpenEyes team

I am new to OE, and just installed it for the first time in dev mode, so apologies if my comment is out of place. I have the impression that install-oe.sh installs incompatible branches of OpenEyes and of the submodules.

In particular, Line 19 checks out the branch feature/IOLmaster of OpenEyes, and the branch master of OphInBiometry.

The problem is that the IOLMaster branch of OpenEyes in PatientController.php relies on a class OphInBiometry_Imported_Events, which is is not present in the master branch of OphInBiometry. In the default current installation provided by oe_installer, this therefore causes a crash of OpenEyes when trying to view a patient, e.g. URL http://localhost:8888/patient/view/19434. The logfile complains the autoload part:
2016/01/21 23:13:57 [error] [php] include(OphInBiometry_Imported_Events.php): failed to open stream: No such file or directory (/var/www/openeyes/protected/yii/framework/YiiBase.php:427)

The class OphInBiometry_Imported_Events.php, however, is present in the branch https://github.com/openeyes/OphInBiometry/tree/feature/IOLMaster of repository OphInBiometry.

In conclusion, shouldn't [https://github.com/openeyes/oe_installer/blob/master/install/install-oe.sh#L34](Line 34 of install-oe.sh) request the branch feature/IOLMaster for all submodules? You will know that better than me, as I am not sure that branch exists for all modules nor that is meant to be in sync throughout all of them.

But without checking that branch at least for OphInBiometry, the current installation of OpenEyes crashes.

All the best, and thanks for your hard work! I'm happy to help diagnose this further if you think I can be helpful.

The command to install the dev tools is not working correctly:

sudo /vagrant/install/install-devtools.sh
[... lots of successful logs...]
npm http 200 https://registry.npmjs.org/wordwrap/0.0.2
npm ERR! registry error parsing json
npm http 304 https://registry.npmjs.org/window-size/0.1.0
npm ERR! error rolling back Error: ENOTEMPTY, rmdir '/var/www/grunt/node_modules/grunt-contrib-uglify/node_modules/uglify-js/node_modules/source-map/dist'
npm ERR! error rolling back  [email protected] { [Error: ENOTEMPTY, rmdir '/var/www/grunt/node_modules/grunt-contrib-uglify/node_modules/uglify-js/node_modules/source-map/dist']
npm ERR! error rolling back   errno: 53,
npm ERR! error rolling back   code: 'ENOTEMPTY',
npm ERR! error rolling back   path: '/var/www/grunt/node_modules/grunt-contrib-uglify/node_modules/uglify-js/node_modules/source-map/dist' }
npm ERR! Error: ENOENT, lstat '/var/www/grunt/node_modules/grunt-contrib-uglify/node_modules/lodash/object/invert.js'
npm ERR! If you need help, you may report this log at:
npm ERR!     <http://github.com/isaacs/npm/issues>
npm ERR! or email it to:
npm ERR!     <[email protected]>
[ ... more stuff ...]

Dear OpenEyes Team,

I am in the process of studying, and testing OpenEyes. Unfortunately the demo links are not letting me see the Demo and the software's features so I thought of installing it in a virtual environment.

I am using VMplayer refer to attached image for detail of the machine settings

I was following the live session instruction on the readme.md file and I am stuck in an error which i cannot work out, any help will be appreciated, please refer to the below last session of my ubuntu vm.

Welcome to Ubuntu 14.04.4 LTS (GNU/Linux 3.19.0-49-generic i686)

• Documentation: https://help.ubuntu.com/

  System information as of Fri Feb 19 00:44:27 PKT 2016

  System load: 2.9 Memory usage: 5% Processes: 167
  Usage of /: 37.0% of 8.73GB Swap usage: 0% Users logged in: 0

  Graph this data and manage this system at:
  https://landscape.canonical.com/

Last login: Wed Feb 17 10:46:04 2016 from 192.168.10.6
zeeshan@ubuntu:~$ sudo /vagrant/install/install-oe.sh
[sudo] password for zeeshan:

Installing openeyes master from http://gitgub.com/openeyes

Downloading OpenEyes code base...

/vagrant/install/install-oe.sh: line 137: /usr/bin/oe-checkout: Permission denied

I am not an expert at ubuntu, but any guidance or advise will be appreciated,

Regards

Cheekoo

I follow the installation steps
However, in the last step it showed

c:\oe_installer>vagrant up
Bringing machine 'default' up with 'virtualbox' provider...
There are errors in the configuration of this machine. Please fix
the following errors and try again:
vm:

• The host path of the shared folder is missing: ./www/

and I can't access the server

Please help me.

trying to install demo live system in bluemix container environment (docker)

install-system.sh will fail when trying to create and manipulate swap settings -- script option to bypass swapfile section?

install-system.sh will fail trying to install fuse device from openjdk-associated packages -- apt-get install will work if it includes "--no-install-recommends"

hardcoding of database name to openeyes in numerous locations prevents creating mysql database in cloud-managed service (these pre-assign dbname) - container with remote database would require options on install-oe.sh to provide -u -p -h -P and -D overrides

just found that cloud mysql server (in multitenant service) does not allow superuser GRANT privileges with default access account -- ideally would like to set username/password to cloud service credentials

Environment: OSX 10.11.6 / Vagrant 1.8.0 / VMWare Fusion 8.1.1

The initial install-system.sh command has been completed successfully moving on to the installation of additional development tools results in the following error at the end of install-behat.sh

---previous updates appear to have completed successfully---
W: Failed to fetch http://dl.google.com/linux/chrome/deb/dists/stable/Release  Unable to find expected entry 'main/binary-i386/Packages' in Release file (Wrong sources.list entry or malformed file)

E: Some index files failed to download. They have been ignored, or old ones used instead.

Works fine until it tries to clone openeyes. After that everything fails fatally. Below is the first failure. I don't understand https://exit@github... seems a very odd address, but resolves to https://github.com/openeyes/openeyes.git which gives a big 404.

openeyes: Doesn't currently exist - cloning from : https://[email protected]/openeyes/openeyes.git
default: Cloning into 'openeyes'...
default: fatal: could not read Password for 'https://[email protected]': No such device or address
default: falling back to develop branch for openeyes...
default: Cloning into 'openeyes'...
default: fatal: could not read Password for 'https://[email protected]': No such device or address
default: falling back to default branch for openeyes...
default: Cloning into 'openeyes'...
default: fatal: could not read Password for 'https://[email protected]': No such device or address
default: could not find develop at openeyes remote. Falling back to openeyes official repo
default: Cloning into 'openeyes'...
default: fatal: could not read Password for 'https://[email protected]': No such device or address